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. Author manuscript; available in PMC: 2019 Aug 1.
Published in final edited form as: Int J Cancer. 2018 Mar 30;143(3):552–560. doi: 10.1002/ijc.31350

Table 2.

Imprinted gene DMR§ methylation distributions in 164 CIN1 patients at Enrollment*

Gene
Name
CpG site N Mean Median SD Interquartile
Range
Range
IGF2AS 5 157 0.47 0.58 0.32 0.57 (0.00, 0.96)

Kv
DMR§ 144 0.30 0.29 0.05 0.07 (0.16, 0.42)

1 143 0.25 0.26 0.06 0.07 (0.12, 0.39)
6 144 0.25 0.26 0.06 0.08 (0.08, 0.41)
8,9 144 0.27 0.27 0.05 0.07 (0.03, 0.40)
10,11,12 142 0.23 0.23 0.06 0.07 (0.03, 0.38)
15 144 0.30 0.31 0.06 0.08 (0.14, 0.43)
17,18 144 0.30 0.31 0.05 0.07 (0.14, 0.49)
20 144 0.31 0.31 0.06 0.06 (0.10, 0.47)
21 144 0.30 0.30 0.06 0.05 (0.12, 0.47)
22 144 0.24 0.24 0.04 0.04 (0.12, 0.43)
24 144 0.29 0.30 0.08 0.10 (0.11, 0.44)
26,27 144 0.55 0.55 0.06 0.07 (0.35, 0.70)

MEG3
DMR§ 152 0.49 0.52 0.11 0.19 (0.26, 0.82)

3 152 0.57 0.59 0.16 0.17 (0.11, 1.00)
6 150 0.54 0.54 0.09 0.28 (0.31, 0.96)
15 152 0.40 0.39 0.10 0.14 (0.00, 0.80)
16 150 0.38 0.38 0.10 0.15 (0.00, 0.82)
20,21 150 0.43 0.42 0.09 0.14 (0.05, 0.75)
22 150 0.54 0.54 0.09 0.17 (0.31, 0.96)
23 152 0.46 0.46 0.10 0.14 (0.21, 0.95)
26,27,28 152 0.55 0.55 0.11 0.21 (0.03, 0.89)
29,30,31 152 0.57 0.56 0.12 0.19 (0.12, 1.00)

PEG10
DMR§ 140 0.30 0.32 0.08 0.07 (0.00, 0.45)

5 137 0.31 0.32 0.10 0.07 (0.02, 0.83)
6 138 0.26 0.27 0.12 0.14 (0.00, 0.47)
7 139 0.32 0.34 0.10 0.07 (0.00, 0.85)
*

CIN = Cervical Intraepithelial Neoplasia; CINCS = Cervical Intraepithelial Neoplasia Cohort Study

Numbers do not add up to the total sample size due to missing data

SD = Standard Deviation

§

DMR = Differentially methylated region; Median across all CpG loci for candidate gene

MEG3 intronic differentially methylated region