Table 5.
CNV detection results
| Cases | Cases: Sequence Read Archive ID | Controls | Controls: Sequence Read Archive ID | Number of CNVs (loss) | Number of CNVs (gain) |
|---|---|---|---|---|---|
| Shetland ponys | SRX1976860, ERX947604, ERX947605 | Control group 1 (three Hanoverian) | SRX389480, SRX389477, SRX1131705 | 253 | 137 |
| Shetland ponys | SRX1976860, ERX947604, ERX947605 | Control group 2 (two Arabian, one Thoroughbred) | SRX389472, SRS431663, SRX396629 | 860 | 1538 |
| Shetland ponys | SRX1976860, ERX947604, ERX947605 | Control group 3 (Duelmen horse, Sorraia, Przewalski) | SRX384479, SRX389475, SRS441443 | 329 | 652 |
| Shetland ponys | SRX1976860, ERX947604, ERX947605 | Control group 4 (Saxon-Thuringian Heavy Warmblood, Marwari, Standardbred) | SRX1131818, SRX535352, SRS438330 | 284 | 309 |
| Intersection of all groups | 91 | 6 |
Number of CNVs identified in four paired case-control analyses are shown. The intersection of these detection results revealed 97 potential Shetland pony-specific CNV regions