Table 2. Genotype frequency distributions of DROSHA and DGCR8 SNPs in included studies.
Ref. No. | Year | Cancer type | Gene | SNPs1 | Sample size | Case | Control | PHWE | MAF in controls (Global MAF4) | Included in meta-analysis | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Case | Control | Homozygote wild | Heterozygote | Homozygote variant | Homozygote wild | Heterozygote | Homozygote variant | ||||||||
1 | 2010 | Lung cancer | DROSHA | rs6877842 | 93 | 93 | 81 | 11 | 1 | 84 | 8 | 1 | 0.136 | 0.054 (0.138) | Yes |
(G > C) | |||||||||||||||
Lung cancer | DROSHA | rs10719 | 97 | 97 | 59 | 29 | 9 | 52 | 38 | 7 | 0.987 | 0.268 (0.483) | Yes | ||
(T > C) | |||||||||||||||
Lung cancer | DGCR8 | rs3757 | 94 | 90 | 60 | 27 | 7 | 60 | 24 | 6 | 0.114 | 0.200 (0.182) | Yes | ||
(G > A) | |||||||||||||||
Lung cancer | DGCR8 | rs417309 | 98 | 97 | 90 | 8 | 0 | 88 | 9 | 0 | 0.632 | 0.046 (0.043) | Yes | ||
(G > A) | |||||||||||||||
Lung cancer | DGCR8 | rs1640299 | 98 | 97 | 58 | 33 | 7 | 52 | 40 | 5 | 0.444 | 0.258 (0.381) | Yes | ||
(T > G) | |||||||||||||||
2 | 2013 | Breast cancer | DROSHA | rs10719 | 847 | 878 | 433 | 346 | 68 | 463 | 353 | 62 | 0.635 | 0.272 (0.483) | Yes |
(T > C) | |||||||||||||||
Breast cancer | DROSHA | rs17409893 | 849 | 885 | 527 | 287 | 35 | 575 | 276 | 34 | 0.902 | 0.194 (0.222) | No3 | ||
(A > G) | |||||||||||||||
Breast cancer | DROSHA | rs2291109 | 858 | 886 | 552 | 273 | 33 | 535 | 306 | 45 | 0.884 | 0.223 (0.061) | Yes | ||
(A > T) | |||||||||||||||
Breast cancer | DROSHA | rs642321 | 854 | 883 | 212 | 423 | 219 | 231 | 433 | 219 | 0.571 | 0.493 (0.322) | Yes | ||
(C > T) | |||||||||||||||
Breast cancer | DGCR8 | rs1640299 | 849 | 891 | 465 | 330 | 54 | 476 | 357 | 58 | 0.412 | 0.265 (0.381) | Yes | ||
(T > G) | |||||||||||||||
Breast cancer | DGCR8 | rs417309 | 860 | 893 | 771 | 89 | 0 | 826 | 67 | 0 | 0.244 | 0.038 (0.043) | Yes | ||
(G > A) | |||||||||||||||
Breast cancer | DGCR8 | rs720012 | 867 | 891 | 225 | 425 | 217 | 240 | 451 | 200 | 0.668 | 0.478 (0.221) | No3 | ||
(G > A) | |||||||||||||||
Breast cancer | DGCR8 | rs720014 | 836 | 880 | 542 | 264 | 30 | 555 | 287 | 38 | 0.907 | 0.206 (0.183) | No3 | ||
(T > C) | |||||||||||||||
3 | 2013 | Breast cancer | DROSHA | rs2291109 | 899 | 957 | 563 | 296 | 40 | 625 | 298 | 34 | 0.835 | 0.191 (0.061) | Yes |
(A > T) | |||||||||||||||
Breast cancer | DGCR8 | rs417309 | 901 | 960 | 830 | 68 | 3 | 910 | 49 | 1 | 0.687 | 0.027 (0.043) | Yes | ||
(G > A) | |||||||||||||||
4 | 2013 | Bladder cancer | DROSHA | rs2291109 | 685 | 730 | 421 | 228 | 36 | 419 | 280 | 31 | 0.062 | 0.234 (0.061) | Yes |
(A > T) | |||||||||||||||
Bladder cancer | DROSHA | rs10719 | 684 | 727 | 352 | 278 | 54 | 413 | 275 | 39 | 0.437 | 0.243 (0.483) | Yes | ||
(T > C) | |||||||||||||||
Bladder cancer | DROSHA | rs642321 | 685 | 730 | 197 | 326 | 162 | 176 | 371 | 183 | 0.655 | 0.505 (0.322) | Yes | ||
(C > T) | |||||||||||||||
5 | 2013 | Renal cell carcinoma | DROSHA | rs10719 | 252 | 246 | 161 | 75 | 16 | 155 | 76 | 15 | 0.177 | 0.215 (0.483) | Yes |
(T > C) | |||||||||||||||
Renal cell carcinoma | DROSHA | rs6877842 | 275 | 278 | 200 | 65 | 10 | 204 | 65 | 9 | 0.185 | 0.149 (0.138) | Yes | ||
(G > C) | |||||||||||||||
Renal cell carcinoma | DGCR8 | rs3757 | 276 | 278 | 163 | 102 | 11 | 162 | 102 | 14 | 0.688 | 0.234 (0.182) | Yes | ||
(G > A) | |||||||||||||||
Renal cell carcinoma | DGCR8 | rs417309 | 277 | 278 | 243 | 30 | 4 | 243 | 34 | 1 | 0.87 | 0.065 (0.043) | Yes | ||
(G > A) | |||||||||||||||
Renal cell carcinoma | DGCR8 | rs1640299 | 277 | 278 | 61 | 151 | 65 | 75 | 136 | 67 | 0.729 | 0.486 (0.381) | Yes | ||
(T > G) | |||||||||||||||
6 | 2015 | Colorectal cancer | DROSHA | rs10719 | 408 | 400 | 224 | 154 | 30 | 211 | 168 | 21 | 0.09 | 0.263 (0.483) | Yes |
(T > C) | |||||||||||||||
7 | 2015 | Laryngeal cancer | DROSHA | rs6877842 | 128 | 170 | 73 | 49 | 6 | 76 | 79 | 15 | 0.384 | 0.321 (0.138) | Yes |
(G > C) | |||||||||||||||
Laryngeal cancer | DGCR8 | rs417309 | 112 | 170 | 67 | 32 | 13 | 116 | 46 | 8 | 0.227 | 0.182 (0.043) | Yes | ||
(G > A) | |||||||||||||||
Laryngeal cancer | DGCR8 | rs1640299 | 113 | 170 | 60 | 47 | 6 | 61 | 93 | 16 | 0.021 | 0.368 (0.381) | No2 | ||
(T > G) | |||||||||||||||
Laryngeal cancer | DGCR8 | rs3757 | 122 | 170 | 29 | 89 | 4 | 36 | 119 | 15 | <0.001 | 0.438 (0.182) | No2 | ||
(G > A) | |||||||||||||||
8 | 2016 | Laryngeal cancer | DROSHA | rs6877842 | 100 | 100 | 60 | 35 | 5 | 44 | 47 | 9 | 0.476 | 0.325 (0.138) | Yes |
(G > C) | |||||||||||||||
Laryngeal cancer | DGCR8 | rs417309 | 100 | 100 | 60 | 28 | 12 | 69 | 27 | 4 | 0.516 | 0.175 (0.043) | Yes | ||
(G > A) | |||||||||||||||
Laryngeal cancer | DGCR8 | rs1640299 | 100 | 100 | 52 | 42 | 6 | 36 | 55 | 9 | 0.062 | 0.365 (0.381) | Yes | ||
(T > G) | |||||||||||||||
9 | 2016 | Hepatocellular carcinoma | DROSHA | rs10719 | 147 | 209 | 81 | 53 | 13 | 110 | 88 | 11 | 0.215 | 0.263 (0.483) | Yes |
(T > C) | |||||||||||||||
Hepatocellular carcinoma | DROSHA | rs6877842 | 147 | 209 | 138 | 9 | 0 | 200 | 9 | 0 | 0.75 | 0.022 (0.138) | Yes | ||
(G > C) | |||||||||||||||
10 | 2017 | Gastirc cancer | DROSHA | rs10719 | 628 | 502 | 314 | 257 | 57 | 248 | 205 | 49 | 0.487 | 0.302 (0.483) | Yes |
(T > C) |
The results were in bold if P<0.05. Abbreviations: MAF, minor allele frequency; PHWE, the P-value for HWE in control groups.
1, The ancestral alleles were referenced in the NCBI database.
2, Excluded due to the SNP not being in accordance with HWE.
3, Excluded due to the limited number for this locus;
4, The global MAFs were referenced in the NCBI database.