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. 2018 Jun 25;19:494. doi: 10.1186/s12864-018-4859-7

Fig. 3.

Fig. 3

Mean false discovery proportion (FDP) versus the correlation due to sample overlap over 100 simulation runs and a covariate-modulated false discovery rate (cmfdr) cut-off of 0.05. Here d=100,000 SNPs were simulated, of which 400 were non-null in both study 1 and study 2, i.e., have positive pleiotropic effects. The test statistics for study 2 were used as a covariate for study 1