Table 1. Represents the list of differential proteins identified in the proteasome pathway.
| REPLICATE 1 | ||||
|---|---|---|---|---|
| Gene Symbol | Protein Description | Σ# Unique Peptides | Σ# PSMs | Fold Change in RR/P |
| PSME1 | proteasome activator complex subunit 1 isoform 1 [Homo sapiens] | 4 | 4 | 2.085 |
| PSMD7 | 26S proteasome non-ATPase regulatory subunit 7 [Homo sapiens] | 3 | 6 | 1.977 |
| PSMA1 | proteasome subunit alpha type-1 isoform 3 [Homo sapiens] | 1 | 2 | 1.634 |
| PSMD2 | 26S proteasome non-ATPase regulatory subunit 2 [Homo sapiens] | 9 | 12 | 1.632 |
| PSMA7 | proteasome subunit alpha type-7 [Homo sapiens] | 4 | 13 | 1.568 |
| PSMB4 | proteasome subunit beta type-4 [Homo sapiens] | 2 | 4 | 1.550 |
| PSMC1 | 26S protease regulatory subunit 4 [Homo sapiens] | 6 | 10 | 1.518 |
| PSMA3 | proteasome subunit alpha type-3 isoform 2 [Homo sapiens] | 2 | 4 | 0.656 |
| PSMD14 | 26S proteasome non-ATPase regulatory subunit 14 [Homo sapiens] | 3 | 4 | 0.593 |
| REPLICATE 2 | ||||
| PSMD9 | 26S proteasome non-ATPase regulatory subunit 9 isoform 1 | 4 | 6 | 1.88 |
| PSMD10 | 26S proteasome non-ATPase regulatory subunit 10 isoform 1 | 6 | 9 | 1.523 |
| PSMC1 | 26S protease regulatory subunit 4 | 19 | 57 | 1.381 |
| PSMC6 | 26S protease regulatory subunit 10B | 16 | 48 | 1.356 |
| PSMD8 | 26S proteasome non-ATPase regulatory subunit 8 | 10 | 21 | 1.356 |
| PSMA4 | proteasome subunit alpha type-4 isoform 1 | 10 | 35 | 1.294 |
| PSME2 | proteasome activator complex subunit 2 | 12 | 30 | 1.281 |
| PSMD13 | 26S proteasome non-ATPase regulatory subunit 13 isoform 1 | 19 | 47 | 1.243 |
| PSMD7 | 26S proteasome non-ATPase regulatory subunit 7 | 10 | 19 | 1.227 |
| PSMD12 | 26S proteasome non-ATPase regulatory subunit 12 isoform 1 | 22 | 44 | 1.207 |
| REPLICATE 3 | ||||
| PSMD9 | 26S proteasome non-ATPase regulatory subunit 9 isoform 1 | 5 | 7 | 3.587 |
| PSMC5 | 26S protease regulatory subunit 8 isoform 1 | 21 | 54 | 1.525 |
| PSMB10 | proteasome subunit beta type-10 precursor | 1 | 1 | 1.445 |
| PSME2 | proteasome activator complex subunit 2 | 9 | 29 | 1.41 |
| PSMD6 | 26S proteasome non-ATPase regulatory subunit 6 isoform 2 | 19 | 30 | 1.382 |
| PSMD4 | 26S proteasome non-ATPase regulatory subunit 4 | 12 | 27 | 1.362 |
| PSMA3 | proteasome subunit alpha type-3 isoform 1 | 9 | 25 | 1.326 |
| PSMD8 | 26S proteasome non-ATPase regulatory subunit 8 | 9 | 19 | 1.321 |
| PSMC6 | 26S protease regulatory subunit 10B | 18 | 52 | 1.318 |
| PSMD13 | 26S proteasome non-ATPase regulatory subunit 13 isoform 1 | 17 | 43 | 1.302 |
| PSMB7 | proteasome subunit beta type-7 precursor | 5 | 17 | 1.278 |
| PSMD2 | 26S proteasome non-ATPase regulatory subunit 2 isoform 1 | 31 | 74 | 1.257 |
| PSMD14 | 26S proteasome non-ATPase regulatory subunit 14 | 13 | 23 | 1.222 |
| PSMC4 | 26S protease regulatory subunit 6B isoform 1 | 17 | 49 | 1.217 |
| REPLICATE 4 | ||||
| PSMD9 | 26S proteasome non-ATPase regulatory subunit 9 isoform 1 | 6 | 10 | 1.95 |
| PSME2 | proteasome activator complex subunit 2 | 9 | 35 | 1.77 |
| PSMD8 | 26S proteasome non-ATPase regulatory subunit 8 | 11 | 22 | 1.579 |
| PSMD4 | 26S proteasome non-ATPase regulatory subunit 4 | 12 | 26 | 1.489 |
| PSMD7 | 26S proteasome non-ATPase regulatory subunit 7 | 11 | 23 | 1.411 |
| PSMC4 | 26S protease regulatory subunit 6B isoform 1 | 23 | 70 | 1.382 |
Columns from the right represent the gene symbol, protein description, #- number of unique peptides identified, number of peptide score matches (PSMs) and the fold change of the proteins in RR w.r.t P.