Table 2. Frequency of genetic amplification involving different chromosomal regions in the test (series 1) vs the validation series (series 2-8) of GBM patients analyzed.
Number of amplified regions | Chromosomal regions involved | Amplified GBM cases | |
---|---|---|---|
Series 1 n=45/80 (56%) |
Series 2-8 n=111/267 (42%) |
||
One chromosomal region amplified (n=100; 29%) |
7p 12q 4q 1q 12p 7q 13q 6p 8q 15q 16q 17q |
17 (21%) 3 (4%) 4 (5%) 2 (3%) (0) (0) (0) (0) (0) (0) 1(1.2%) (0) |
46(17%) 10 (4%) 6 (2%) 1 (0.4%) 2 (0.8%) 2 (0.8%) 2 (0.8%) 1 (0.4%) 1 (0.4%) 1 (0.4%) (0) 1 (0.4%) |
Subtotal | 27 (34%) | 73 (27%) | |
Two chromosomal regions amplified (n=39; 11%) |
7p,12q
1q,7p 1q,4q 7p,7q 3q,7p 4q,7p 4q,12q 1q,5p 1p7q 2q,12q 4q,9p 5p,7p 5q,7p 7p,11p 7p,9p 7p,14q 7p, Xp 17q,20q 20p,20q |
4 (5%) 2 (3%) (0) 1 (1.2%) (0) (0) 2 (3%) (0) 1 (1.2%) (0) (0) (0) (0) 1 (1.2%) (0) (0) (0) (0) (0) |
4 (1%) 3 (1%) 3 (1%) 2 (0.8%) 2 (0.8%) 2 (0.8%) 2 (0.8%) 1 (0.4%) (0) 1 (0.4%) 1 (0.4%) 1 (0.4%) 1 (0.4%) (0) 1 (0.4%) 1 (0.4%) 1 (0.4%) 1 (0.4%) 1 (0.4%) |
Subtotal | 11 (14%) | 28 (10%) | |
≥Three chromosomal regions amplified (n=17; 5%) |
1p,1q,10q 1p,7p,12q 1p,12q,17q 1q,7p,12q 4p,4q,12p 4q,7p,12q 4q,7q,12p 4q7q12q 4q,7p,18q 5q,6q,7p 6p,7q,12q 7p,17p,17q 2p,7p,12p,12q 4q,7p,7q,15q 7p11p11q12q 7q,12q,17q,20q 1p,4p,7p,11q,14q |
(0) (0) 1 (1.2%) 1 (1.2%) (0) 1 (1.2%) (0) 1 (1.2%) (0) 1 (1.2%) (0) 1 (1.2%) (0) (0) 1 (1.2%) (0) (0) |
1 (0.4%) 1 (0.4%) (0) (0) 1 (0.4%) (0) 1 (0.4%) (0) 1 (0.4%) (0) 1 (0.4%) (0) 1 (0.4%) 1 (0.4%) (0) 1 (0.4%) 1 (0.4%) |
Subtotal | 7 (9%) | 10 (4%) |
Results expressed as number (percentage) of cases showing gene amplification/chromosome arm.