Table 3.
Hub genes for hypermethylated, lowly expressed genes ranked in cytoHubba
| Catelogy |
Rank methods in cytoHubba |
|||||
| MNC | Degree | EPC | Closeness | Radiality | Stress | |
| Gene symbol top 10 | PTGS2 | ADCY5 | PTGS2 | PIK3CD | PIK3CD | PTGS2 |
| PIK3CD | MMP2 | PIK3CD | PTGS2 | PTGS2 | PIK3CD | |
| ADCY5 | PTGS2 | MMP2 | MMP2 | MMP2 | MMP2 | |
| ADCY1 | PIK3CD | ADCY5 | ESR1 | ESR1 | PRKG1 | |
| CXCL1 | PRKG1 | ADCY1 | PRKG1 | TLR2 | ESR1 | |
| ESR1 | ADCY1 | ESR1 | TLR2 | SERPINE1 | FYN | |
| MMP2 | ESR1 | CXCL1 | FYN | PRKG1 | RAC2 | |
| FYN | FYN | TLR2 | CXCL1 | SNAI1 | SERPINE1 | |
| TLR2 | CXCL1 | CALCA | SERPINE1 | CRP | CXCL1 | |
| SERPINE1 | TLR2 | PTGER2 | ADCY5 | CXCL1 | ADCY5 | |
Bold gene symbols were the overlap hub genes in top 10 by six ranked methods respectively in cytoHubba. MNC: Maximum neighborhood component; Degree: Node connect degree; EPC: Edge percolated component.