Table 1. . Variants identified from the literature previously associated with tacrolimus trough concentrations.
rs# | Proxy SNP† | Gene | Chrom. | Position | Common name | Nucleotide | Amino acid | Ref. |
---|---|---|---|---|---|---|---|---|
rs11265572 | NR1I3 | 1 | 1.61E + 08 | g.161243273G>T | Noncoding | [6] | ||
rs1800872 | IL10 | 1 | 2.07E + 08 | -592C>A | c.-627A>C | Noncoding | [7,8] | |
rs1800871 | IL10 | 1 | 2.07E + 08 | -819C>T | c.-854T>C | Noncoding | [7,8] | |
rs1800896 | IL10 | 1 | 2.07E + 08 | -1082G>A | c.-1117A>G | Noncoding | [9] | |
rs4553808 | rs16840252 | CTLA4 | 2 | 2.04E + 08 | c.-1661A>G | Noncoding | [10] | |
rs3814055 | NR1I2 | 3 | 1.2E + 08 | -25385T>C | c.-1135C>T | Noncoding | [11,12] | |
rs6785049 | NR1I2 | 3 | 1.2E + 08 | 7635A/G | c.795-93G>A | Noncoding | [13] | |
rs2276707 | rs3814057 | NR1I2 | 3 | 1.2E + 08 | 8055C>T | c.938-17C>T | Noncoding | [14] |
rs181781 | rs657075 | IL3 | 5 | 1.32E + 08 | c.-1285G>A | Noncoding | [10] | |
rs1800796 | rs1524107 | IL6 | 7 | 22726627 | c.-636G>C | Noncoding | [15] | |
rs1057868 | POR | 7 | 75985688 | *28 | c.1508C>T | p.Ala503Val | [16–22] | |
rs1045642 | rs2235048 | ABCB1 | 7 | 87509329 | 3435C/T | c.3435T>C | p.Ile1145= | [12,23–29] |
rs2032582 | rs4148738 | ABCB1 | 7 | 87531302 | 2677G/T/A | c.2677T/A/G | p.Ser893Ala/Thr | [12,24,27–30] |
rs1128503 | ABCB1 | 7 | 87550285 | 1236C/T | c.1236T>C | p.Gly412= | [12,24,28–30] | |
rs2229109 | rs117937072 | ABCB1 | 7 | 87550493 | 1199G/A | c.1199G>A | p.Ser400Asn | [30,31] |
rs9282564 | ABCB1 | 7 | 87600124 | 61A/G | c.61A>G | p.Asn21Asp | [24] | |
rs3213619 | ABCB1 | 7 | 87600877 | -129T/C | c.-129T>C | Noncoding | [13] | |
rs41303343 | CYP3A5 | 7 | 99652770 | *7 | c.1035_1036insT | p.Thr346Tyrfs | [32,33] | |
rs10264272 | CYP3A5 | 7 | 99665212 | *6 | c.624G>A | p.Lys208= | [32,33] | |
rs4646450 | CYP3A5 | 7 | 99668695 | c.319-1630C>T | Noncoding | [34] | ||
rs776746 | CYP3A5 | 7 | 99672916 | *3 | c.219-237A>G | Noncoding | [10–12,16,18,19,23,25,26,29,30,32,34–42] | |
rs2257401 | CYP3A7 | 7 | 99709062 | *2 | c.1226C>G | p.Thr409Arg | [11] | |
rs2242480 | CYP3A4 | 7 | 99763843 | *1G | c.1023 + 12G>A | Noncoding | [7,10–12,29] | |
rs28371759 | CYP3A4 | 7 | 99764003 | *18B | c.875T>C | p.Leu292Pro | [43,44] | |
rs4646437 | CYP3A4 | 7 | 99767460 | c.671-205C>T | Noncoding | [7,10] | ||
rs35599367 | CYP3A4 | 7 | 99768693 | *22 | c.522-191C>T | Noncoding | [16,17,20,21,39,45–47] | |
rs2740574 | CYP3A4 | 7 | 99784473 | *1B | c.-392G>A | Noncoding | [42,48–51] | |
rs1927907 | TLR4 | 9 | 1.18E + 08 | c.140 + 1757C>T | Noncoding | [52] | ||
rs4986893 | CYP2C19 | 10 | 94780653 | *3 | c.636G>A | p.Trp212Ter | [40] | |
rs4244285 | rs12571421 | CYP2C19 | 10 | 94781859 | *2 | c.681G>A | p.Pro227= | [37,40,53] |
rs2273697 | ABCC2 | 10 | 99804058 | 1249G>A | c.1249G>A | p.Val417Ile | [42] | |
rs3740066 | ABCC2 | 10 | 99844450 | 3972C>T | c.3972C>T | p.Ile1324= | [42] | |
rs2070673 | CYP2E1 | 10 | 1.34E + 08 | c.-333A>T | Noncoding | [37] | ||
rs2237991 | ABCC8 | 11 | 17418682 | c.2223-1720T>C | Noncoding | [54] | ||
rs5744247 | IL18 | 11 | 1.12E + 08 | c.-8-372C>G | Noncoding | [38] | ||
rs1946518 | rs1946519 | IL18 | 11 | 1.12E + 08 | A-607C | c.-838A>C | Noncoding | [41] |
rs4149117 | SLCO1B3 | 12 | 20858546 | T334G | c.335C>A | p.Ser112Ala | [55] | |
rs7311358 | SLCO1B3 | 12 | 20862826 | G699A | c.699G>A | p.Met233Ile | [55] | |
rs2306283 | SLCO2B1 | 12 | 21176804 | A388G | c.388A>G | p.Asn130Asp | [30] | |
rs4149056 | SLCO2B1 | 12 | 21178615 | T521C | c.521T>C | p.Val174Ala | [30] | |
rs3745274 | CYP2B6 | 19 | 41006936 | *6 | c.516G>T | p.Gln172His | [37] | |
rs2239393 | COMT | 22 | 19962905 | c.289 + 90A>G | Noncoding | [56] | ||
rs4823613 | rs4253730 | PPARA | 22 | 46202410 | c.208 + 3819A>G | Noncoding | [19] | |
rs4253728 | rs4253730 | PPARA | 22 | 46214170 | c.209-1003G>A | Noncoding | [19,46] |
†SNP was used as a proxy when a variant was not present in the genotyping chip.