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. 2001 Oct 15;29(20):e96. doi: 10.1093/nar/29.20.e96

Table 2. Scorpions and primers sequences.

Oligonucleotide name Code Oligonucleotide sequence
W1282X reverse primer   GGCTAAGTCCTTTTGCTCAC
Stem–loop FAM Scorpion W-001 2CCCGCGCCTTTCCTCCACTGTTGCGCGCGGG43ATGGTGTGTCTTGGGATTCA
Duplex FAM Scorpion 1 W-002 2CTTTCCTCCACTGTTGC3ATGGTGTGTCTTGGGATTCA
Quencher oligonucleotide standard W-003 GCAACAGTGGAGGAAAG4
Quencher oligonucleotide short W-004 CAGTGGAGGAAAG4
W1282X FRET stem–loop Scorpion W-005 5CCCGCG8CCTTTCCTCCACTGTTGCGACGCGGG76ATGGTGTGTCTTGGGATTCA
W1282X FRET duplex Scorpion 6 base separation W-006 5CTTTCC6CCACTGTTGC3ATGGTGTGTCTTGGGATTCA
Double quencher oligo 6 base separation W-007 GCAACAGTGG7GGAAAG4
Internal quencher oligonucleotide W-008 GCAACAGTGG7GGAAAG8
W1282X FRET duplex Scorpion 11 base separation W-009 5CTTTCCTCCAC6GTTGC3ATGGTGTGTCTTGGGATTCA
Double quencher oligo 11 base separation W-010 GCAAC7GTGGAGGAAAG4
W1282X FRET duplex Scorpion 3 base separation W-011 5CTT6CCTCCACTGTTGC3ATGGTGTGTCTTGGGATTCA
Double quencher oligo 3 base separation W-012 GCAACAGTGGAGG7AAG4

2 = FAM, 3 = HEG, 4 = Me Red dR, 5 = ROX, 6 = Fam Cap Prop dU, 7 = Me Red Prop deaza dA, 8 = phosphate (see Fig. 2).