Fig. 4.
Selection scan statistics at the RAI1 Locus. Selection scan statistics surrounding the retinoic acid-induced 1 (RAI1) locus (chr5: ~ 41.6-41.2 Mb). a Per site FST scores for all SNPs are indicated along with the FST significance threshold determined by the 99th percentile of simulations (red dashed line). b Bars represent raw XP-CLR grid scores. Circles indicate the mean XP-CLR score calculated from averaging grid scores within 25 kb windows and are positioned within the center point window. Red bars and circles indicate that the score is significant (above the 99th percentile significance threshold determined through simulations). The black line indicates the average pooled heterozygosity (HP) values for the same window boundaries. c The significant XP-CLR locus (gray box) is presented relative to Ensembl gene models (black). Direction of each gene is indicated with blue arrows