Table 1.

Average accuracy, precision, recall and cluster scores, taken over the set of all simulated gene trees (see the Results section for the definitions)

	Accuracy	Precision	Recall	Cluster score
HyPPO	0.940	0.911	0.875	0.915
HyPPO + Species tree	0.949	0.924	0.905	0.915
OMA-GETHOGS	0.877	0.940	0.699	0.831
OrthoMCL	0.812	0.845	0.496	0.690