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. 2018 Jun 27;34(13):i237–i244. doi: 10.1093/bioinformatics/bty228

Table 1.

The list of hyperparameters in CNNs to be tuned

Hyperparameter Range
Kernel size for convolution 3, 7, 15, 20, 30, 40, 50
Number of kernels (in two convolution layers) 6:13, 13:26, 19:38, 32:64, 45:90, 64:128, 128:256
Pooling method Max pooling, average pooling,
Pooling in second layer Global max pooling, local max pooling
Number of units in hidden layer (ratio to input layer) 1/3, 1/2, 2/3, 3/4, 1
Learning algorithm Adam, AdaGrad, AdaDelta, Momentum SGD