Table 7.

Performance comparison on clustering accuracy by means of read mapping profiles as additional information

Method	Accuracy	F-value
CNN with SHARAKU (one-hot coding)	0.907	0.815
CNN with DAFS (one-hot coding)	0.903	0.811
Spectral clustering based on SHARAKU	0.747	0.516

Note: ‘CNN with SHARAKU (one-hot coding)’ represents one-dimensional CNN with input of SHARAKU alignments of sequences, secondary structures and read mapping profiles with one-hot coding; ‘spectral clustering based on SHARAKU’ represents spectral clustering based on the SHARAKU alignment score.