Table 2.

Performance of EMASE, RSEM, kallisto, unique-reads and WASP on identifying ASE using significance tests with Beta-Binomial model at $\alpha /2=0.01$ on simulated data

Method	True positive	True negative	False positive	False negative	No call
EMASE M2	4595	2805	115	2459	61
RSEM	4519	2827	86	2524	79
kallisto	4406	2808	102	2624	95
unique-reads	3038	1518	96	1351	4032
WASP	1864	823	251	1245	5852