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Results from simulation study on transitively closed networks. Structural Hamming distance (SHD) measuring the performance (y-axis) of pc-NEMs (yellow) and NEMs with adaptive simulated annealing (green) and module network (blue) algorithms, on simulated data from 30 different transitively closed networks of size N = 8 and perturbation maps, with varying number of phenotypic effects and noise levels. The networks were sampled from hsa05200 pathway
