Table 1.
Statistics of RNA families used in the experimentation
| Family | Nb of seq. | Avg. PID | Avg. seq. length |
|---|---|---|---|
| BRALIBASE II (Gardner et al., 2005) | |||
| g2intron | 70 | 65.882 ± 8.062 | 83.129 ± 21.266 |
| rRNA | 98 | 63.347 ± 9.254 | 117.551 ± 2.483 |
| tRNA | 72 | 58.118 ± 10.699 | 72.306 ± 2.891 |
| U5 | 80 | 70.518 ± 11.145 | 118.162 ± 4.853 |
| MXSCARNA (Tabei et al., 2008) | |||
| RF00002-5-8S_rRNA | 46 | 71.941 ± 9.16 | 154.065 ± 6.198 |
| RF00003-U1 | 42 | 67.681 ± 10.378 | 158.048 ± 7.73 |
| RF00004-U2 | 51 | 72.533 ± 8.144 | 185 ± 17.233 |
| RF00008-Hammerhead_3 | 54 | 73.695 ± 12.659 | 55.593 ± 6.356 |
| RF00011-RNaseP_bact_b | 19 | 68.409 ± 7.725 | 391.105 ± 20.08 |
| RF00012-U3 | 17 | 67.099 ± 10.473 | 246.529 ± 48.758 |
| RF00015-U4 | 25 | 74.138 ± 10.812 | 141.4 ± 8.718 |
| RF00017-SRP_euk_arch | 49 | 58.704 ± 9.567 | 294.49 ± 11.518 |
| RF00019-Y | 16 | 73.112 ± 10.184 | 94.688 ± 11.898 |
| RF00023-tmRNA | 36 | 60.047 ± 6.007 | 374.611 ± 22.09 |
| RF00024-Telomerase | 24 | 69.91 ± 9.578 | 463.125 ± 32.332 |
| RF00025-Telomerase | 16 | 69.203 ± 10.443 | 168.938 ± 16.027 |
| RF00031-SECIS | 49 | 54.205 ± 8.691 | 64.592 ± 3.278 |
| RF00037-IRE | 37 | 67.658 ± 17.802 | 28.757 ± 1.442 |
| RF00045-U17 | 23 | 75.837 ± 8.466 | 214.174 ± 7.088 |
| RF00050-RFN | 28 | 69.952 ± 5.845 | 150.179 ± 11.845 |
| RF00162-S_box | 17 | 72.446 ± 6.275 | 128.941 ± 17.594 |
| RF00163-Hammerhead_1 | 21 | 98.078 ± 1.195 | 115.095 ± 5.281 |
| RF00164-s2m | 37 | 78.798 ± 9.912 | 42.919 ± 0.682 |
| RF00167-Purine | 35 | 62.371 ± 5.52 | 99.571 ± 0.884 |
| RF00168-Lysine | 37 | 59.646 ± 5.828 | 179.838 ± 6.56 |
| RF00169-SRP_bact | 55 | 62.417 ± 8.332 | 95.309 ± 8.613 |
| RF00181-sno_14q_I_II | 42 | 70.603 ± 9.011 | 73.976 ± 4.027 |
| RF00233-Tymo_tRNA | 28 | 71.698 ± 10.734 | 82.643 ± 2.87 |
| RF00236-ctRNA_pGA1 | 17 | 77.224 ± 12.086 | 80.294 ± 1.724 |
| RF00436-UnaL2 | 60 | 78.47 ± 9.396 | 54.4 ± 1.861 |