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. 2018 May 25;7(2):32. doi: 10.3390/biology7020032

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© 2018 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Inpactor results for the four species tested (Arabidopsis thaliana, Oryza sativa, Coffea canephora and Zea mays) based on LTR_STRUC detection. (A) Initial classification of LTR-RTs into autonomous (Gypsy and Copia) or non-autonomous (Terminal-repeat Retrotransposon In Miniature (TRIM), Large Retrotransposon Derivative (LARD) or Terminal repeat with Gag domain (TR-GAG)); (B) classification of the autonomous elements into lineages showing the variability that can be found in plant genomes; (C) phylogenetic trees using the RT domain; (D) insertion time analysis using autonomous elements (Copia and Gypsy).