Table 1. Description of the seven largest physical P450 clusters in the V. vinifera genome.
Label | Chr | Location | Total seq. | Complete genes | Expressed seq. | Co-expression | Organization |
---|---|---|---|---|---|---|---|
65 | 15 | 15572751.. 15909327 |
20 CYP76 4 CYP704 |
10 | 20 | Flowers and constitutive | Low similarity among members |
71 | 16 | 401789.. 596606 |
16 CYP89 | 11 | 14 | All leaves | Single gene duplications |
92 | 18 | 9625486.. 9912876 |
22 CYP82 1 CYP74 1 CYP704 |
14 | 16 | Powdery mildew infection and ripe berries | Duplicated blocks with co-expression; some single gene duplications |
138 | 3 | 4387722.. 4512089 |
22 CYP82 | 5 | 16 | Young berries | Small duplicated blocks, a few are co-expressed, single gene duplications |
171 | 6 | 16790972.. 17446396 |
21 CYP75 14 CYP79 |
8 | 28 | All leaves and powdery mildew infection | Single gene duplications |
182 | 7 | 22260680.. 22372250 |
20 CYP81 | 9 | 15 | Berries | Small duplicated blocks, a few are co-expressed, single gene duplications |
190 | 8 | 18038159.. 18121816 |
11 CYP76 | 7 | 9 | Flowers | Duplicated blocks with co-expression; some single gene duplication |
Label—sequential number of each cluster in the genome; Chr—chromosome number; Location—chromosome coordinates; Total seq.—number of P450 sequences in each cluster, including complete and partial genes, putative pseudogenes and pseudogenes with their family distribution; Complete genes—number of complete P450 genes in the cluster; Expressed sequences—number of expressed P450 sequences in the cluster, co-expression—expression pattern of the cluster; Organization—description of structural organization and mechanism of formation of each cluster.