Table 3.
Comparative transcript abundances of cell cycle genes in reproductive tissues of P. aphrodite by RNA-sequencing analysis.
| FPKM values |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30/40 | 50/60 | 70/80 | 90/100/120 | 140/160 | 180/200 | PLB | Protocorm | Young | Stalk | Floral | ||
| Transcript ID | Annotation | DAP | DAP | DAP | DAP | DAP | DAP | leaves | buds | stalks | ||
| E2Fs and DPs | ||||||||||||
| orchid.id113590.tr318945 | PaE2F1 | 6.7 | 4.3 | 2.9 | 7.8 | 2.2 | 1.5 | 5.0 | 7.0 | 3.8 | 3.0 | 3.7 |
| orchid.id117614.tr38827 | PaE2F2 | 3.1 | 1.4 | 1.5 | 1.5 | 1.3 | 2.0 | 0.3 | 2.5 | 1.1 | 0.7 | 0.9 |
| orchid.id1949.tr77229 | PaE2F3 | 14.2 | 6.4 | 2.7 | 1.8 | 5.5 | 4.8 | 3.2 | 5.2 | 3.4 | 3.4 | 4.6 |
| orchid.id42993.tr191185 | PaE2F4 | 1.3 | 0.9 | 1.3 | 0.9 | 0.8 | 0.5 | 1.7 | 2.6 | 2.8 | 2.4 | 2.9 |
| orchid.id113906.tr107393 | PaDP1 | 53.0 | 48.1 | 54.5 | 60.2 | 32.4 | 37.7 | 47.5 | 41.7 | 38.6 | 43.1 | 42.6 |
| orchid.id123685.tr127191 | PaDP2 | 4.4 | 4.5 | 3.1 | 3.4 | 3.0 | 3.0 | 1.2 | 1.4 | 3.1 | 1.9 | 2.8 |
| Cell cycle genes enriched at 30/40 DAP | ||||||||||||
| orchid.id130751.tr142269 | PaPCNA1 | 44.1 | 27.2 | 4.9 | 3.9 | 11.1 | 5.7 | 38.1 | 22.2 | 18.0 | 15.4 | 28.7 |
| orchid.id93462.tr632091 | PaCYCA1;1 | 22.2 | 16.3 | 0.4 | 2.0 | 6.9 | 4.5 | 5.3 | 25.9 | 17.7 | 0.2 | 7.8 |
| orchid.id104694.tr178804 | PaCYCA2;3 | 20.3 | 12.0 | 1.8 | 1.8 | 7.6 | 15.1 | 7.5 | 9.2 | 9.2 | 6.0 | 8.5 |
| orchid.id119353.tr176450 | PaCYCA3:2 | 11.3 | 6.3 | 1.4 | 0.2 | 0.4 | 0.1 | 2.8 | 5.1 | 4.3 | 2.6 | 7.0 |
| orchid.id130531.tr130848 | PaCYCB1;1 | 27.5 | 22.3 | 1.1 | 2.4 | 1.8 | 0.1 | 1.7 | 3.2 | 11.5 | 14.9 | 31.9 |
| orchid.id3686.tr138153 | PaCYCB1;2 | 4.2 | 5.7 | 0.2 | 0.2 | 0.0 | 0.0 | 0.1 | 0.2 | 3.2 | 0.0 | 2.1 |
| orchid.id100343.tr56122 | PaCYCB2;1 | 34.8 | 26.1 | 0.2 | 1.2 | 0.8 | 0.0 | 2.8 | 4.2 | 8.9 | 0.3 | 12.5 |
| orchid.id121744.tr208045 | PaCYCD1;3 | 7.7 | 6.0 | 1.9 | 0.6 | 0.6 | 0.6 | 0.6 | 0.3 | 5.2 | 0.2 | 2.8 |