Table 5.
Significant genic SNPs harbored genes for CWT and EMA traits in Korean Hanwoo cattle.
| Ensembl ID1 | Gene symbol | BTA2 | Position3 (bp) | No. of SNPs | P-value4 |
|---|---|---|---|---|---|
| ENSBTAG00000005989 | LAP3 | 6 | 38577764 ~ 38583582 | 6 | 1.22E-08 |
| ENSBTAG00000005932 | FAM184B | 6 | 38648218 ~ 38670165 | 5 | 1.06E-16 |
| ENSBTAG00000021582 | NCAPG | 6 | 38794618 ~ 38804348 | 5 | 1.35E-08 |
| ENSBTAG00000046561 | LCORL | 6 | 38849296 ~ 38900113 | 11 | 1.35E-08 |
| ENSBTAG00000005108 | SLIT2 | 6 | 41262050 ~ 41526051 | 10 | 1.02E-08 |
| ENSBTAG00000047743 | KCNIP4 | 6 | 41845249 ~ 41900486 | 2 | 2.84E-09 |
| ENSBTAG00000044106 | SPIDR | 14 | 20753321 ~ 20875591 | 5 | 5.95E-09 |
| ENSBTAG00000017019 | PRKDC | 14 | 21043161 ~ 21151156 | 32 | 1.15E-12 |
| ENSBTAG00000044050 | XKR4 | 14 | 24332803 ~ 24474674 | 8 | 1.36E-08 |
| ENSBTAG00000015637 | IMPAD1 | 14 | 25546508 ~ 25560744 | 6 | 1.29E-11 |
| ENSBTAG00000005287 | CYP7A1 | 14 | 26351959 ~ 26351959 | 1 | 2.82E-15 |
| ENSBTAG00000019910 | SDCBP | 14 | 26443481 ~ 26445603 | 2 | 5.75E-15 |
| ENSBTAG00000008958 | NSMAF | 14 | 26496858 ~ 26496858 | 1 | 3.62E-16 |
| ENSBTAG00000004954 | TOX | 14 | 26631471 ~ 26941314 | 48 | 1.25E-08 |
| ENSBTAG00000026283 | ASPH | 14 | 28702223 ~ 28712341 | 6 | 1.09E-08 |
| ENSBTAG00000001299 | CYP7B1 | 14 | 31058827 ~ 31064078 | 3 | 1.49E-08 |
| ENSBTAG00000008629 | MTFR1 | 14 | 31766665 ~ 31766665 | 1 | 4.63E-10 |
| ENSBTAG00000011614 | PDE7A | 14 | 31820412 ~ 31851268 | 10 | 4.63E-10 |
| ENSBTAG00000015229 | DNAJC5B | 14 | 32053374 ~ 32135874 | 6 | 9.43E-09 |
| ENSBTAG00000021009 | TRIM55 | 14 | 32186730 ~ 32186730 | 1 | 5.34E-10 |
| ENSBTAG00000002192 | C8orf46 | 14 | 32761431 ~ 32770549 | 5 | 3.95E-10 |
| ENSBTAG00000044080 | CPA6 | 14 | 33605805 ~ 33606681 | 2 | 3.5E-11 |
| ENSBTAG00000022169 | PREX2 | 14 | 34132990 ~ 34240707 | 20 | 4.82E-09 |
| ENSBTAG00000022588 | C8orf34 | 14 | 34435605 ~ 34442538 | 9 | 5.14E-10 |
1Gene ID names were retrieved from Ensembl database using variant effect predictor (VEP) tools (McLaren et al., 2016) based on Bos taurus genome reference assembly UMD 3.1; 2Bos taurus autosome; 3Only first and last variant positions are presented for each gene; 4Represents the lowest P-value among the SNPs identified in a gene.