REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and Virus Strains | ||
Recombinant baculovirus expressing FluPolC PB1, P3 and PB2-protein A | Bieniossek et al., 2012, Hengrung et al., 2015 | N/A |
Recombinant baculovirus expressing FluPolA PB1, P3 and PB2-protein A | Bieniossek et al., 2012, York et al., 2013 | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
AcTEV protease | Thermo Fisher Scientific | Cat# 12575015 |
SuperScript III | Thermo Fisher Scientific | Cat# 18080093 |
pS5-CTD: Biotin-PEG-YSPTS∗PSYSPTS∗ PSYSPTS∗PSYSPTS∗PS |
Cambridge Peptides; Martínez-Alonso et al., 2016 | N/A |
pS2-CTD: Biotin-PEG-YS∗PTSPSYS∗PTSPSYS∗ PTSPSYS∗PTSPS |
Cambridge Peptides; Martínez-Alonso et al., 2016 | N/A |
UnP-CTD: Biotin-PEG-YSPTSPSYSPTSPSYS PTSPSYSPTSPS |
Cambridge Peptides; Martínez-Alonso et al., 2016 | N/A |
Scr-CTD: Biotin-PEG-PSSSTPSSYTPSPSSS PTSYSPYYTSPP |
Cambridge Peptides; Martínez-Alonso et al., 2016 | N/A |
IgG Sepharose 6 Fast Flow | GE Healthcare | Cat# 17096901 |
Hi-Load Superdex 200 16/60 | GE Healthcare | Cat# 45-002-490 |
Lipofectamine 2000 | Thermo Fisher Scientific | Cat# 11668027 |
TRI Reagent | Sigma-Aldrich | Cat# T9424 |
[α-32P] GTP | PerkinElmer | Cat# BLU006H250UC |
Vaccinia capping system | New England Biolabs | Cat# M2080S |
Deposited Data | ||
Coordinates of pS5-CTD bound FluPolC | This paper | PDB: 6F5O |
Cryo-EM map of promoter vRNA bound FluPolC | This paper | EMDB: EMD-4190 |
Imaging data deposited in Mendeley | This paper | https://doi.org/10.17632/tswbw8d2h7.1 |
Experimental Models: Cell Lines | ||
HEK293T cells | Dunn School Cell Bank | N/A |
Sf9 insect cells | Dunn School Cell Bank | N/A |
Oligonucleotides | ||
vRNA RT primer 5′-CGCAAGGCGACAA GGTGCTGA-3′ |
Fodor et al., 2002 | N/A |
m/cRNA RT primer 5′-ATGTTCTTTACGA TGCGATTGGG-3′ |
Fodor et al., 2002 | N/A |
5S rRNA RT primer 5′-ACCCTGCTTAGCTT CCGAGA-3′ |
Hara et al., 2006 | N/A |
RNA for capping (20 nt) 5′-ppAAUCUAUAAUAG CAUUAUCC-3′ |
Chemgenes; Hengrung et al., 2015 | N/A |
RNA for capping (11 nt) 5′-ppGAAUACUCAAG-3′ | Chemgenes; Hengrung et al., 2015 | N/A |
5′ FluPolC vRNA promoter RNA 5′-AGCAGUAGCAA GGGG-3′ |
Dharmacon; Hengrung et al., 2015 | N/A |
3′ FluPolC vRNA promoter RNA 5′-CCCCUGCUU CUGCU-3′ |
Dharmacon; Hengrung et al., 2015 | N/A |
5′ FluPolA vRNA promoter RNA 5′- AGUAGAAAC AAGGCC-3′ |
Dharmacon; Fodor et al., 2002 | N/A |
3′ FluPolA vRNA promoter RNA 5′- GGCCUGCU UUUGCU-3′ |
Dharmacon; Fodor et al., 2002 | N/A |
Recombinant DNA | ||
pHMG PB1 | Donated by Nadia Naffakh; Crescenzo-Chaigne et al., 1999 | N/A |
pHMG PB2 | Donated by Nadia Naffakh; Crescenzo-Chaigne et al., 1999 | N/A |
pHMG PA | Donated by Nadia Naffakh; Crescenzo-Chaigne et al., 1999 | N/A |
pHMG NP | Donated by Nadia Naffakh; Crescenzo-Chaigne et al., 1999 | N/A |
pC/PRCAT | Donated by Nadia Naffakh; Crescenzo-Chaigne et al., 1999 | N/A |
Software and Algorithms | ||
Chimera 1.10.2 | Pettersen et al., 2004 | https://www.cgl.ucsf.edu/chimera/download.html |
ResMap | Kucukelbir et al., 2014 | http://resmap.sourceforge.net/ |
RELION (VLION) | Scheres, 2012 | https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Download_%26_install |
EMAN2 | Tang et al., 2007 | http://blake.bcm.edu/emanwiki/EMAN2 |
Motioncor2 | Zheng et al., 2017 | http://msg.ucsf.edu/em/software/motioncor2.html |
CryoSPARC | Punjani et al., 2017 | https://v2.cryosparc.com/ |
GCTF | Zhang, 2016 | https://www.mrc-lmb.cam.ac.uk/kzhang/Gctf/ |
Xia2 | Winter et al., 2013 | https://xia2.github.io/ |
PHASER | McCoy et al., 2007 | http://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software |
COOT | Emsley and Cowtan, 2004 | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
PHENIX | Adams et al., 2010 | https://www.phenix-online.org/ |
SWISS-MODEL Oligomer server | Biasini et al., 2014 | https://swissmodel.expasy.org/ |
Aida Image Analyzer (3.27.001) | Elysia Raytest | N/A |