Table 1.
Sample | Raw data (reads) | Valid data (reads) | Valid ratios | Q20% | Q30% | ||
---|---|---|---|---|---|---|---|
A | 103779510 | 12.97G | 103087524 | 12.89G | 99.33 | 99.49 | 88.82 |
ABC | 88869438 | 11.11G | 88088334 | 11.01G | 99.12 | 99.68 | 88.64 |
BC | 96915650 | 12.11G | 96083300 | 12.01G | 99.14 | 99.65 | 88.68 |
A, Brassica rapa; BC, Brassica carinata; ABC, Brassica hexaploid. Q20% represents the proportion of the data that quality values are greater than Q20 in raw data. Q30% represents the proportion of the data that quality values are greater than Q30 in raw data.