Table 1.
List of genes upregulated in 35S::AtDICE1 plants
| AGI* | WT | F† | 7-5 | F | 10-1 | F | 11-6 | F | 7-5/WT‡ | 10-1/WT | 11-6/WT | cob-5 /WT§ | Gene description | St/Def¶ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G72260 | 6.7 | A | 7978.0 | P | 2015.0 | P | 2907.6 | P | 1185.5 | 299.3 | 431.9 | 106.4 | thionin 2.1 | YES |
| AT4G15100 | 15.9 | A | 1239.8 | P | 156.3 | P | 88.0 | P | 78.2 | 9.9 | 5.5 | 12.5 | serine carboxypeptidase- like 30 | |
| AT2G39330 | 267.0 | P | 8145.8 | P | 4897.3 | P | 4446.0 | P | 30.5 | 18.3 | 16.7 | 43.1 | jacalin-related lectin 23 | YES |
| AT2G41610 | 408.1 | P | 8791.5 | P | 6760.8 | P | 3807.9 | P | 21.5 | 16.6 | 9.3 | 0.7 | AtDCE1 | |
| AT1G54020 | 166.3 | P | 3426.4 | P | 1788.4 | P | 1949.7 | P | 20.6 | 10.8 | 11.7 | 53.9 | GDSL esterase/lipase | YES |
| AT1G52030 | 805.8 | P | 14800.8 | P | 9016.5 | P | 10847.8 | P | 18.4 | 11.2 | 13.5 | n/a | myrosinase-binding protein 2 | YES |
| AT1G52040 | 181.9 | P | 2666.8 | P | 2117.9 | P | 2019.6 | P | 14.7 | 11.6 | 11.1 | 27.6 | myrosinase-binding protein 1 | YES |
| AT1G33760 | 41.1 | P | 525.4 | P | 394.8 | P | 295.1 | P | 12.8 | 9.6 | 7.2 | 20.2 | ERF022 | YES |
| AT4G01985 | 16.9 | A | 215.6 | P | 298.5 | P | 118.7 | P | 12.7 | 17.6 | 7.0 | n/a | hypothetical protein | |
| AT3G28220 | 3471.2 | P | 38 894.9 | P | 28 177.1 | P | 36 552.9 | P | 11.2 | 8.1 | 10.5 | 13.6 | TRAF-like family protein | |
| AT1G66370 | 43.3 | P | 478.5 | P | 254.8 | P | 224.4 | P | 11.1 | 5.9 | 5.2 | 7.4 | MYB113 | YES |
| AT4G27160 | 17.4 | A | 167.7 | P | 53.5 | P | 162.2 | P | 9.6 | 3.1 | 9.3 | 0.3 | seed storage albumin 3 | |
| AT1G35140 | 1734.1 | P | 15 869.4 | P | 13 207.7 | P | 17 206.2 | P | 9.2 | 7.6 | 9.9 | 3.5 | PHI-1/EXL1 | YES |
| AT5G28237 | 4.9 | A | 41.3 | P | 51.1 | P | 26.7 | P | 8.4 | 10.3 | 5.4 | n/a | tryptophan synthase-like protein | |
| AT4G27170 | 18.9 | A | 157.0 | P | 57.5 | P | 103.7 | P | 8.3 | 3.0 | 5.5 | 0.5 | seed storage albumin 4 | |
| AT3G27810 | 7.2 | A | 53.6 | P | 57.1 | P | 45.0 | P | 7.4 | 7.9 | 6.2 | 1.6 | MYB21 | YES |
| AT4G17920 | 25.1 | A | 184.6 | P | 247.3 | P | 222.6 | P | 7.3 | 9.8 | 8.9 | n/a | RING-H2 finger protein ATL29 | |
| AT1G61120 | 21.4 | A | 150.9 | P | 180.1 | P | 321.5 | P | 7.0 | 8.4 | 15.0 | 71.5 | terpene synthase 04 | YES |
| AT1G17380 | 222.5 | P | 1471.2 | P | 982.5 | P | 1118.6 | P | 6.6 | 4.4 | 5.0 | 21.7 | JAZ5/TIFY 11A | YES |
| AT4G34410 | 35.5 | P | 230.8 | P | 121.3 | P | 148.0 | P | 6.5 | 3.4 | 4.2 | 0.3 | ERF109 | YES |
| AT1G52400 | 11461.6 | P | 72 721.5 | P | 44 118.3 | P | 51 794.5 | P | 6.3 | 3.8 | 4.5 | 3.1 | BGLU18/beta glucosidase 18 | YES |
| AT1G52410 | 3933.8 | P | 23 332.2 | P | 16 344.8 | P | 15 134.4 | P | 5.9 | 4.2 | 3.8 | 21.9 | TSK-associating protein 1 | YES |
| AT3G25180 | 11.3 | A | 66.3 | P | 70.7 | P | 131.2 | P | 5.9 | 6.3 | 11.7 | 2.9 | CYP82G1 | YES |
| AT1G76640 | 174.4 | P | 999.9 | P | 660.1 | P | 551.5 | P | 5.7 | 3.8 | 3.2 | 19.2 | calcium-binding protein CML39 | |
| AT2G34600 | 244.6 | P | 1319.1 | P | 798.1 | P | 1062.2 | P | 5.4 | 3.3 | 4.3 | 1.7 | JAZ7/TIFY 5B | YES |
| AT5G41750 | 622.9 | P | 3355.5 | P | 2809.3 | P | 2847.5 | P | 5.4 | 4.5 | 4.6 | n/a | TIR-NBS-LRR disease-resistant protein | YES |
| AT5G59310 | 1746.9 | P | 9175.7 | P | 24 203.0 | P | 17 251.5 | P | 5.3 | 13.9 | 9.9 | 1.7 | non-specific lipid-transfer protein 4 | YES |
| AT5G41740 | 354.1 | P | 1794.6 | P | 1501.2 | P | 1671.3 | P | 5.1 | 4.2 | 4.7 | 4.7 | TIR-NBS-LRR disease-resistant protein | YES |
| AT1G66610 | 16.7 | A | 83.5 | P | 91.2 | P | 54.5 | P | 5.0 | 5.4 | 3.3 | 1.5 | E3 ubiquitin-ligase SINA-like 1 | |
| AT1G66860 | 6.8 | A | 33.6 | P | 48.6 | P | 30.9 | P | 5.0 | 7.2 | 4.6 | 2.6 | Class I glutamine amidotransferase-like | |
| AT4G28790 | 21.5 | A | 100.4 | P | 172.9 | P | 175.4 | P | 4.7 | 8.1 | 8.2 | n/a | transcription factor bHLH23 | |
| AT5G59580 | 17.2 | A | 77.4 | P | 66.9 | P | 66.7 | P | 4.5 | 3.9 | 3.9 | 0.8 | UDP-glucosyl transferase 76E1/UGT76E1 | |
| AT5G24780 | 7476.2 | P | 33 245.3 | P | 35 412.6 | P | 39 064.4 | P | 4.4 | 4.7 | 5.2 | 4.8 | vegetative storage protein 1 | YES |
| AT4G11911 | 15.3 | A | 67.4 | P | 132.8 | P | 84.5 | P | 4.4 | 8.7 | 5.5 | n/a | hypothetical protein | |
| AT5G13220 | 260.0 | P | 1124.2 | P | 815.6 | P | 886.6 | P | 4.3 | 3.1 | 3.4 | 11.0 | JAZ10/TIFY 9 | YES |
| AT1G77640 | 338.2 | P | 1433.9 | P | 1595.4 | P | 1283.1 | P | 4.2 | 4.7 | 3.8 | 2.4 | ERF013 | |
| AT3G27415 | 20.9 | A | 87.1 | P | 146.4 | P | 111.3 | P | 4.2 | 7.0 | 5.3 | n/a | hypothetical protein | |
| AT5G57560 | 5382.4 | P | 22 307.3 | P | 21 813.0 | P | 21 676.0 | P | 4.1 | 4.1 | 4.0 | 1.3 | TCH4/XTH22 | |
| AT4G23215 | 17.7 | A | 73.1 | P | 89.4 | P | 74.1 | P | 4.1 | 5.0 | 4.2 | n/a | hypothetical protein | |
| AT4G29570 | 16.6 | A | 68.0 | P | 175.5 | P | 185.8 | P | 4.1 | 10.6 | 11.2 | 2.7 | cytidine/deoxycytidylate deaminase-like | |
| AT2G32200 | 259.6 | P | 1056.0 | P | 838.7 | P | 1025.1 | P | 4.1 | 3.2 | 3.9 | n/a | unknown protein | |
| AT1G03880 | 38.8 | P | 155.0 | P | 118.8 | P | 557.6 | P | 4.0 | 3.1 | 14.4 | 2.2 | cruciferin 2 | YES |
| AT4G10265 | 208.0 | P | 824.1 | P | 850.3 | P | 994.6 | P | 4.0 | 4.1 | 4.8 | n/a | putative wound-responsive protein | YES |
| AT5G24770 | 10375.6 | P | 40 351.9 | P | 65 197.1 | P | 55 171.0 | P | 3.9 | 6.3 | 5.3 | n/a | vegetative storage protein 2 | YES |
| AT4G12735 | 11.8 | A | 45.1 | P | 40.4 | P | 41.3 | P | 3.8 | 3.4 | 3.5 | n/a | hypothetical protein | |
| AT5G30341 | 9.5 | A | 36.2 | P | 43.5 | P | 40.7 | P | 3.8 | 4.6 | 4.3 | n/a | hypothetical protein | |
| AT5G11410 | 447.9 | P | 1698.6 | P | 1865.2 | P | 1458.5 | P | 3.8 | 4.2 | 3.3 | 18.9 | protein kinase family protein | |
| AT1G52000 | 482.5 | P | 1782.7 | P | 1549.3 | P | 1480.3 | P | 3.7 | 3.2 | 3.1 | 7.1 | jacalin-like lectin domain protein | YES |
| AT4G16590 | 33.7 | P | 124.4 | P | 247.1 | P | 397.6 | P | 3.7 | 7.3 | 11.8 | 4.2 | cellulose synthase-like A01 | |
| AT5G52760 | 107.3 | P | 395.5 | P | 503.6 | P | 354.6 | P | 3.7 | 4.7 | 3.3 | 7.9 | copper transport family protein | |
| AT1G21910 | 2375.9 | P | 8713.1 | P | 7190.5 | P | 7939.6 | P | 3.7 | 3.0 | 3.3 | 2.5 | ERF012/DREB26 | YES |
| AT5G58400 | 52.8 | P | 193.5 | P | 184.9 | P | 170.7 | P | 3.7 | 3.5 | 3.2 | 1.2 | peroxidase 68 | YES |
| AT1G69880 | 1654.5 | P | 6054.5 | P | 6756.3 | P | 6254.5 | P | 3.7 | 4.1 | 3.8 | 11.6 | thioredoxin H8 | YES |
| AT1G19610 | 305.4 | P | 1104.3 | P | 1089.4 | P | 1019.9 | P | 3.6 | 3.6 | 3.3 | 9.3 | PDF1.4/defensin-like protein 19 | YES |
| AT2G38250 | 121.0 | P | 435.5 | P | 681.0 | P | 363.1 | P | 3.6 | 5.6 | 3.0 | 3.6 | DNA-binding protein | |
| AT5G49520 | 284.6 | P | 998.3 | P | 991.5 | P | 900.4 | P | 3.5 | 3.5 | 3.2 | 3.7 | WRKY48 | YES |
| AT3G57260 | 74.7 | P | 260.4 | P | 800.4 | P | 1107.0 | P | 3.5 | 10.7 | 14.8 | 8.4 | BGL2/β-1,3-glucanase 2/PR2 | YES |
| AT1G68290 | 172.0 | P | 599.1 | P | 532.4 | P | 625.9 | P | 3.5 | 3.1 | 3.6 | 2.4 | endonuclease 2 | |
| AT2G17040 | 1983.1 | P | 6898.2 | P | 6486.4 | P | 5957.2 | P | 3.5 | 3.3 | 3.0 | 5.0 | ANAC036 | YES |
| AT4G02170 | 45.9 | P | 157.5 | P | 188.2 | P | 172.0 | P | 3.4 | 4.1 | 3.7 | 2.3 | hypothetical protein | |
| AT4G02330 | 4488.5 | P | 15 318.2 | P | 18 712.9 | P | 21 081.7 | P | 3.4 | 4.2 | 4.7 | 10.0 | pectinesterase/ATPMEPCRB | |
| AT3G50770 | 504.3 | P | 1692.4 | P | 1544.9 | P | 2176.5 | P | 3.4 | 3.1 | 4.3 | 2.1 | calcium-binding protein CML41 | |
| AT1G72520 | 438.8 | P | 1431.8 | P | 1316.7 | P | 2118.1 | P | 3.3 | 3.0 | 4.8 | 8.2 | lipoxygenase 4 | YES |
| AT2G35290 | 468.8 | P | 1491.9 | P | 1571.7 | P | 1476.1 | P | 3.2 | 3.4 | 3.1 | 0.8 | SAUR79 | |
| AT3G02550 | 111.9 | P | 351.8 | P | 411.3 | P | 461.1 | P | 3.1 | 3.7 | 4.1 | 1.2 | LOB41 | YES |
| AT4G32060 | 15.2 | A | 47.6 | P | 54.6 | P | 86.8 | P | 3.1 | 3.6 | 5.7 | 0.7 | calcium-binding EF hand protein | |
| AT4G25810 | 2394.0 | P | 7487.3 | P | 8327.9 | P | 7563.7 | P | 3.1 | 3.5 | 3.2 | 5.2 | XTH23 | |
| AT1G63750 | 1816.6 | P | 5667.8 | P | 6791.9 | P | 7526.2 | P | 3.1 | 3.7 | 4.1 | 1.7 | TIR-NBS-LRR disease-resistant protein | YES |
| AT2G14560 | 72.0 | P | 222.7 | P | 521.3 | P | 253.2 | P | 3.1 | 7.2 | 3.5 | 3.8 | LURP1 | YES |
| AT2G05580 | 32.8 | P | 100.1 | P | 130.3 | P | 115.9 | P | 3.1 | 4.0 | 3.5 | 0.2 | glycine-rich protein | |
| AT4G14365 | 591.9 | P | 1784.3 | P | 2416.5 | P | 2205.6 | P | 3.0 | 4.1 | 3.7 | 4.9 | E3 ubiquitin-protein ligase XBAT34 | YES |
| AT2G23100 | 19.5 | A | 58.7 | P | 61.5 | P | 87.2 | P | 3.0 | 3.2 | 4.5 | 1.5 | cys/his-rich C1 domain protein |
*AGI, Arabidopsis Gene Index.
†F, flag calling (presence, absence, marginal).
‡Fold change.
§Data from Ko et al. (2006b).
¶Stress/defence-related genes.