Table 3.
Overall alignment statistics for the comparison between Fluidigm2PURC and the reduce_amplicons.R script
| Statistics | PIS_3 | PIS_4 | ||
|---|---|---|---|---|
| Fluidigm2PURC | reduce_amplicons | Fluidigm2PURC | reduce_amplicons | |
| Consensus | ||||
| Alignment length (bp) | 395 | 415 | 403 | 418 |
| Percent gaps | 27.9 | 30.0 | 1.9 | 4.4 |
| Parsimony informative sites | 19 | 19 | 11 | 10 |
| Unknown ploidy/occurrence | ||||
| No. of haplotypes | 18 | 5 | 14 | 6 |
| Alignment length (bp) | 395 | 403 | 403 | 424 |
| Percent gaps | 16.2 | 48.9 | 2.7 | 7.1 |
| Parsimony informative sites | 48 | 11 | 43 | 10 |
| Known ploidy | ||||
| No. of haplotypes | 57 | — | 43 | — |
| Alignment length (bp) | 395 | — | 403 | — |
| Percent gaps | 10.3 | — | 2.6 | — |
| Parsimony informative sites | 81 | — | 62 | — |