Table 1.
Gene of interest | A. Canu followed by tBLASTx | B. tBLASTx followed by Canu | Size genome/segment** | ||||
---|---|---|---|---|---|---|---|
Contig Length | Reads | Identity to ref.* | Contig Length | Reads | Identity to ref.* | ||
PEDV | 27459 | 3046 | 98% | 27385 | 5056 | 98% | 28033 |
RVA - VP1 | 3409 | 45 | 97% | 3675 | 158 | 98% | 3302 |
RVA - VP2 | 2620 | 109 | 98% | 2636 | 186 | 98% | 2717 |
RVA - VP3 | 2345 | 46 | 96% | 2675 | 159 | 98% | 2591 |
RVA - VP4 | 2318 | 120 | 99% | 2328 | 183 | 99% | 2359 |
RVA - VP6 | 1301 | 69 | 99% | 1371 | 123 | 98% | 1356 |
RVA - VP7 | 1185 | 45 | 98% | 1448 | 70 | 98% | 1062 |
RVA - NSP1 | 1717 | 42 | 98% | 1699 | 112 | 98% | 1567 |
RVA - NSP2 | 1275 | 32 | 98% | 1273 | 66 | 98% | 1059 |
RVA - NSP3 | 1379 | 31 | 98% | 1600 | 67 | 97% | 1076 |
RVA - NSP4 | 860 | 20 | 95% | 877 | 37 | 98% | 750 |
RVA - NSP5 | 896 | 22 | 99% | 865 | 32 | 98% | 664 |
*Identity compared to reference genome CV777 (PEDV) and 12R046 (porcine RVA).
**Based on reference strains CV777 (PEDV) and Gottfried (porcine RVA).