Table 2.
Coverage ratio analysis of the six sequenced individuals. Values were normalized to the M1-0B genome (B- male). Values show the number of extra copies in a sample compared to that in the reference. Numbers are the sum of all loci expanded on the B chromosome.
| Element | Class | Family | F1-0B/M1-0B | F2-1B/M1-0B | M2-1B/M1-0B | M3-1B/M1-0B | M4-2B/M1-0B |
|---|---|---|---|---|---|---|---|
| Gypsy-188_DR-I | LTR | Gypsy | 0.00 | 357.90 | 478.75 | 505.95 | 977.98 |
| AlRepB-26 | LINE | L2 | 2.07 | 454.47 | 438.12 | 454.37 | 976.85 |
| BEL32-I_DR | LTR | Pao | 11.24 | 276.16 | 324.04 | 343.45 | 731.48 |
| Gypsy-23_GA-I | LTR | Gypsy | 0.00 | 311.83 | 336.77 | 360.23 | 709.62 |
| Mariner-N13_DR | DNA | TcMar-Tc1 | 17.81 | 276.37 | 294.65 | 312.57 | 648.31 |
| AlRepB-738 | DNA | hAT-Ac | 23.67 | 320.79 | 356.62 | 382.23 | 631.88 |
| BEL32-LTR_DR | LTR | Pao | 5.46 | 215.99 | 278.12 | 309.23 | 593.38 |
| Maui | LINE | L2 | 777.82 | 916.34 | 626.59 | 665.77 | 312.38 |
| AlRepC-927 | DNA | hAT-Ac | 253.98 | 250.69 | 96.81 | 92.91 | 0.00 |
| AlRepB-157 | Satellite | Satellite | 545.89 | 537.41 | 39.69 | 23.75 | 44.40 |
| TZSAT | Satellite | Satellite | 181.04 | 177.25 | 4.73 | 4.52 | 6.86 |
M: Male; F: Female; 0B: Absence of B chromosomes; 1B: Presence of one B chromosome; 2B: Presence of two B chromosomes.