| ADI | Arginine deiminase |
| BBC | Bobro-based motif comparison |
| BoBro | Bottleneck broken |
| CEM | Co-expression (gene) module |
| DEG | Differentially expressed gene |
| DGE | Differential gene expression |
| E. coli | Escherichia coli |
| GAD | Glutamate decarboxylases |
| GRN | Gene regulatory network |
| LDH | Lactate dehydrogenase |
| L. lactis | Lactococcus lactis |
| MG1363 | Lactococcus lactis MG1363 |
| Motif | Cis-regulatory motif |
| RECTA | Regulon identification based on comparative genomics and transcriptomics analysis |
| TF | Transcription factors |
| TFBS | Transcriptional factor binding site |