Figure 3.

Schematic of comparisons for the calculation of correlation coefficients between sets of loci within species. (A) Designation of outlier loci based on $F_{ST}$, which was used for the calculation of $r^2$ for (B) outlier loci within the given chromosome, (C) non-outlier loci within the given chromosome, and (D) outlier loci with non-outlier loci within the given chromosome. Further, $r^2$ values werecalculated for sets of loci on the given chromosome with respective sets sampled from all other chromosomes, with (E) outlier loci vs. outliers from other chromosomes, (F) non-outlier loci vs. non-outliers from other chromosomes, and (G) outlier loci vs. non-outliers from other chromosomes.