Table 2. Genome, transcriptome, and annotation statistics for M. spicilegus.
| De novo genome assembly | Valuea |
|---|---|
| Scaffold N50 | 2 198 966 |
| Scaffold N90 | 235 414 |
| Assembly size scaffolds | 2 496 544 896 |
| Contig N50 | 30 918 |
| Contig N90 | 7729 |
| Contig assembly size | 2 390 795 516 |
| Scaffolds 10kb+ N50 | 2 265 242 |
| Scaffolds 10kb+ N90 | 413 257 |
| Size 10kb+ scaffolds | 2 396 298 463 |
| De novo transcriptome | |
| Number of assembled transcripts | 169 733 |
| Total bases in assembled transcriptome | 229 968 259 |
| Transcriptome N50 | 2178 |
| Transcriptome N90 | 536 |
| Number of predicted proteins | 112 521 |
| Number of full length predicted proteins | 55 149 |
| Annotated genome | |
| Number of transcript to genome alignments (GMAP) | 771 752 |
| Number of PASA2 assemblies | 83 465 |
| Number of AUGUSTUS ab initio models | 28 885 |
| Number of protein to genome alignments | 16 665 |
| Number of EVM gene models | 28 624 |
| Number of final gene models with PASA | 26 074 |
| Average gene length | 18 265 |
| Average protein lengthb | 465.2 |
| Average cDNA length | 2476.2 |
| Number of exons | 334 559 |
| Average number of exons/gene | 12.8 |
| Number of genes with Blast hit ≤1e-10 | 25 557 |
a
Values are reported in base pairs or bamino acids.