. 2018 May 24;8(7):2471–2481. doi: 10.1534/g3.118.200273

Table 2. Variance components estimates (posterior standard deviation) derived from BayesB model for late blight and common scab resistance by model. Phenotypic scores were standardized to unit variance; hence estimates can be interpreted as the proportion of variance explained by each component. Results obtained with the fully Gaussian model (BRR) are presented in Table S2.

Model # (label)^a	Year	Genetic						Genotype-by-year^g	Error
		Genotype	Marker-derived				Total genetic^f
		Genotype	PC^b	Additive^c	Dominance^d	General^e	Total genetic^f
Late blight
M1	0.266 (0.021)								0.735 (0.025)
M2	0.256 (0.014)	0.434 (0.018)					0.434 (0.018)		0.303 (0.011)
M3	0.250 (0.027)	0.340 (0.031)					0.340 (0.031)	0.253 (0.019)	0.144 (0.006)
M4	0.244 (0.026)	0.265 (0.028)	0.096 (0.024)				0.351 (0.032)	0.251 (0.018)	0.144 (0.006)
M5 (A)	0.240 (0.027)		0.135 (0.069)	0.292 (0.051)			0.330 (0.035)	0.275 (0.020)	0.144 (0.006)
M6 (A+D)	0.240 (0.027)		0.135 (0.062)	0.166 (0.063)	0.141 (0.049)		0.340 (0.034)	0.267 (0.020)	0.144 (0.006)
M7 (G)	0.249 (0.028)		0.107 (0.043)			0.280 (0.034)	0.352 (0.033)	0.251 (0.019)	0.144 (0.006)
Common Scab
M1	0.033 (0.006)								0.971 (0.022)
M2	0.030 (0.004)	0.456 (0.016)					0.456 (0.016)		0.523 (0.012)
M3	0.029 (0.005)	0.440 (0.021)					0.440 (0.021)	0.059 (0.009)	0.483 (0.013)
M4	0.029 (0.006)	0.419 (0.021)	0.030 (0.012)				0.447 (0.023)	0.056 (0.009)	0.485 (0.013)
M5 (A)	0.031 (0.006)		0.132 (0.087)	0.507 (0.076)			0.443 (0.025)	0.061 (0.009)	0.485 (0.013)
M6 (A+D)	0.031 (0.006)		0.107 (0.073)	0.356 (0.087)	0.151 (0.060)		0.448 (0.024)	0.057 (0.009)	0.485 (0.013)
M7 (G)	0.031 (0.006)		0.051 (0.030)			0.442 (0.031)	0.451 (0.023)	0.056 (0.009)	0.484 (0.013)

M1-M7 are model numbers (label). The effects included in each of them are described in the columns.

Principal components, ^clinear regression on allele content (0/1/2/3/4), ^dSimple dominance (1 degree of freedom per locus representing heterozygous) and ^eGeneral model for additive + dominance (with up to 4 degrees of freedom per locus). ^fTotal genetic variance, ^gGenotype-by-year interaction.