Table 3.
Stable additive QTLs for seedling traits in the NAM population.
| Chromosome | Position | Right maker | Left maker | QTL detected for N+, N− treatments |
Comparison with previous studies |
|||
|---|---|---|---|---|---|---|---|---|
| N+ | N− | N+ and N− | QTL | References | ||||
| 1A | 115 | BobWhite_c12305_959 | wsnp_Ex_c11939_19147790 |
QRDW-1A.1 QTDW-1A.1 |
QTdw-1A.1 | Sun et al., 2013 | ||
|
QTdw.1, QRdw.1 |
Guo et al., 2012 | |||||||
| 1A | 120 | BS00062759_51 | BS00063847_51 | QRSDW-1A.1 | ||||
| 1B | 37 | Tdurum_contig20299_368 | BobWhite_c48550_198 |
QRSDW-1B.1 QSDW-1B.1 |
||||
| 1B | 42 | wsnp_Ex_c5098_9047611 | BS00063092_51 | QRSDW-1B.2 |
SDW-H, NUP-H, RDW-H, |
An et al., 2006 | ||
| 1B | 44 | tplb0048b10_1365 | Ku_c28580_432 | QRDW-1B.1 | QRSDW-1B.3 | |||
| 1B | 50 | RAC875_c1785_366 | BS00082071_51 | QSDW-1B.2 | ||||
| 1B | 52 | wsnp_Ex_c1440_2764269 | BS00072289_51 | QRDW-1B.2 | ||||
| 1B | 58 | wsnp_Ex_c21559_30710510 | Kukri_c44191_452 | QSDW-1B.3 | TN-H | An et al., 2006 | ||
| cTRL | Laperche et al., 2006 | |||||||
| 1B | 1 | Kukri_c8390_1102 | BS00080212_51 | QSDW-1B.4 | ||||
| 1B | 55 | Ex_c29452_302 | BobWhite_c20073_382 | QRSDW-1B.4 | ||||
| 1D | 26 | BS00042197_51 | RAC875_c62_1514 | QRDW-1D.1 | Qsnp-1D | Xu et al., 2014 | ||
| RFW, RDW | Zhang et al., 2013 | |||||||
| 2A | 31 | IAAV7468 | Tdurum_contig66015_346 | QRDW-2A.1 | R-GS | Fontaine et al., 2009 | ||
| QTkw-2A.1, QKl-2A.1 | Cui et al., 2014 | |||||||
| 2A | 48 | RAC875_c20700_853 | RAC875_c13116_943 | QTDW-2A.1 | QSDW-2A.1 | QTkw-2A.2 | Cui et al., 2014 | |
| 2A | 52 | Tdurum_contig47258_1039 | wsnp_Ex_c22645_31845564 | QRDW-2A.2 |
QSDW-2A.2 QTDW-2A.2 |
QKnps-2A.2 | Cui et al., 2014 | |
| 2A | 72 | Ra_c26702_797 | Excalibur_c96_619 | QRDW-2A.3 | NS%, GPC | Laperche et al., 2007 | ||
| 2A | 75 | BobWhite_c16923_64 | RAC875_c104160_61 | QRDW-2A.4 | ||||
| 2A | 76 | Tdurum_contig60205_806 | Excalibur_rep_c66618_87 | QSDW-2A.3 | ||||
| 2A | 81 | Ku_c13700_1196 | BS00107804_51 | QRDW-2A.5 | QTDW-2A.3 | |||
| 2A | 84 | IAAV2861 | wsnp_Ex_rep_c70299_69243401 | QRDW-2A.6 | QTDW-2A.4 | SDW | Zhang et al., 2013 | |
| 2A | 94 | BobWhite_c17783_174 | CAP7_c1527_136 | QRDW-2A.7 | ||||
| 2A | 97 | Tdurum_contig47508_250 | BS00053834_51 | QRDW-2A.8 | ||||
| 2B | 10 | BS00099658_51 | Excalibur_c17250_592 | QSDW-2B.1 | QGY-2B | Xu et al., 2014 | ||
| R-GS, A-GS, A-DTH | Fontaine et al., 2009 | |||||||
| LA, cTDM, tADM | Laperche et al., 2006 | |||||||
| 2B | 40 | Ex_c12051_875 | BS00041585_51 | QSDW-2B.2 | ||||
| 2B | 73 | RFL_Contig4849_702 | BS00066545_51 | QRDW-2B.1 | ||||
| 2B | 77 | RFL_Contig1987_3440 | Tdurum_contig26542_457 | QTDW-2B.1 | ||||
| 2B | 78 | Excalibur_rep_c66577_159 | RFL_Contig4718_1269 | QRDW-2B.2 | ||||
| 2B | 80 | GENE-4029_80 | wsnp_BE490763B_Ta_2_1 | QRDW-2B.3 | R-GDH, R-NH4 | Fontaine et al., 2009 | ||
|
TDM, tRDM, TRM, TRL, RUE |
Laperche et al., 2006 | |||||||
| 2B | 91 | Tdurum_contig28795_322 | wsnp_Ex_c45468_51254832 | QTDW-2B.2 | ||||
| 2B | 93 | RAC875_c35778_201 | BS00094578_51 | QTDW-2B.3 | ||||
| 2B | 94 | BS00022374_51 | BS00009060_51 | QRDW-2B.4 | ||||
| 2B | 98 | Excalibur_c42146_266 | BS00026432_51 | QTDW-2B.4 | ||||
| 2B | 108 | BS00060618_51 | wsnp_RFL_Contig2324_1803878 | QRDW-2B.5 | ||||
| 3A | 4 | Excalibur_c34889_526 | Jagger_c6722_104 | QRDW-3A.1 | ||||
| 3A | 7 | RAC875_c787_431 | Ku_c17560_91 | QRDW-3A.2 | ||||
| 3A | 10 | BS00036492_51 | BS00022129_51 | QRSDW-3A.1 |
QSDW-3A.1 QRDW-3A.3 QTDW-3A.1 |
TN-H, RDW-H | An et al., 2006 | |
| GPA-3A | Laperche et al., 2007 | |||||||
| 3B | 63 | wsnp_Ku_c29102_39008953 | wsnp_Ex_c64005_62986957 | QTDW-3B.1 | ||||
| 3B | 115 | IAAV8892 | BS00071041_51 | QRDW-3B.1 | QTKW.3B | Xu et al., 2014 | ||
| QRFW.WL.3B | Zhang et al., 2013 | |||||||
| 4A | 17 | BobWhite_rep_c66057_98 | wsnp_Ex_c5690_9994305 | QRDW-4A.1 | NUP-LN2 | An et al., 2006 | ||
| 4A | 21 | Ra_c7973_1185 | IAAV4609 | QTDW-4A.1 | ||||
| 4A | 22 | Ku_c11865_406 | wsnp_Ex_c31508_40288653 | QSDW-4A.1 | ||||
| 5A | 24 | BS00047242_51 | Excalibur_rep_c95828_165 | QTDW-5A.1 | ||||
| 5A | 30 | wsnp_Ex_c18941_27840714 | Tdurum_contig10601_289 | QRSDW-5A.1 | NUP-HN1 | An et al., 2006 | ||
| 5B | 30 | RAC875_c29907_115 | BS00015136_51 | QTDW-5B.1 | ||||
| 6B | 10 | wsnp_Ku_c24391_34351602 | Kukri_c23491_274 | QSDW-6B.1 | NUP-LN1 | An et al., 2006 | ||
| 6B | 19 | CAP11_c7959_386 | wsnp_Ex_c7191_12352173 | QRSDW-6B.1 | QRDW-6B.1 | |||
| 6B | 48 | wsnp_Ra_c20409_29673950 | BS00033629_51 | QRSDW-6B.2 | ||||
| 6D | 85 | BS00022787_51 | IACX5958 | QTDW-6D.1 | ||||
| 7A | 7 | Tdurum_contig5646_929 | Excalibur_c20311_240 | QRDW-7A.1 | NS%-7A1 | Laperche et al., 2007 | ||
| SFW | Zhang et al., 2013 | |||||||
| QTkw-7A.2 | Cui et al., 2014 | |||||||
| 7A | 90 | RFL_Contig5285_365 | BS00108184_51 | QTDW-7A.1 | QSLFW.WY.7A | Zhang et al., 2013 | ||
| 7A | 105 | Excalibur_c47990_159 | wsnp_Ku_c10202_16937059 | QRDW-7A.2 | NUP-H | An et al., 2006 | ||
| 7A | 113 | CAP7_c7296_88 | BobWhite_c5125_258 | QTDW-7A.2 | ||||
| 7B | 0 | wsnp_Ex_c7934_13467460 | Tdurum_contig55961_526 |
QSDW-7B.2 QTDW-7B.1 |
NUR | Laperche et al., 2006 | ||
| NUP | Laperche et al., 2006 | |||||||
| 7B | 35 | BobWhite_c10448_80 | Jagger_c9314_100 | QSDW-7B.1 | NS%-7B1 | Laperche et al., 2007 | ||
| cLRN_PRL | Laperche et al., 2006 | |||||||
aQTLs marked with a bold typeface represent primary QTLs.