Table 10.
Avg. | HapCHAT | HapCol | WhatsHap | WhatsHap | HapCUT2 | ReFHap | ProbHap | FastHare |
---|---|---|---|---|---|---|---|---|
Cov. | cov. 15x | cov. 20x | ||||||
25 | 1378 | 2180 | 930 | 5161 | 3262 | 3007 | 4284 | 3007 |
30 | 1667 | 4187 | 930 | 6117 | 3266 | 3008 | 5320 | 3008 |
35 | 1984 | 2134 | 931 | 6558 | 3270 | 3008 | 5709 | 3008 |
40 | 2315 | 2186 | 932 | 6780 | 3272 | 3009 | - | 3009 |
45 | 2665 | 5037 | 932 | 7043 | 3276 | 3010 | - | 3010 |
50 | 3180 | 5223 | 932 | 7058 | 3279 | 3010 | - | 3010 |
55 | 3591 | 5483 | 996 | 7212 | 3282 | 3011 | - | 3011 |
60 | 4009 | 2374 | 1039 | 7294 | 3286 | 3011 | - | 3011 |
For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare