Table 14.
Time in seconds on datasets of NA12878
| Chrom. | HapCHAT | HapCol | WhatsHap | WhatsHap | HapCUT2 | ReFHap | ProbHap | FastHare |
|---|---|---|---|---|---|---|---|---|
| cov. 15x | cov. 20x | |||||||
| 1 | 20183 | - | 3300 | 41626 | 6301 | - | - | 980 |
| 2 | 21913 | - | 3686 | 46937 | 6758 | - | - | 1075 |
| 3 | 19325 | - | 2994 | 38040 | 5536 | - | - | 776 |
| 4 | 21744 | - | 3031 | 40083 | 5998 | - | - | 862 |
| 5 | 18416 | - | 2943 | 36674 | 5169 | - | - | 790 |
| 6 | 17792 | - | 2658 | 35189 | 5640 | - | - | 759 |
| 7 | 14321 | - | 2409 | 32550 | 4429 | - | - | 744 |
| 8 | 15930 | - | 2421 | 29902 | 4578 | - | - | 669 |
| 9 | 11307 | - | 1886 | 23586 | 3369 | 86913 | - | 635 |
| 10 | 13943 | - | 2244 | 27638 | 3914 | 86941 | - | 670 |
| 11 | 13291 | - | 1983 | 25419 | 3916 | 86833 | - | 567 |
| 12 | 12684 | - | 1916 | 25865 | 4054 | 86814 | - | 554 |
| 13 | 11100 | - | 1474 | 20288 | 2952 | 86686 | - | 406 |
| 14 | 9017 | - | 1265 | 17658 | 2644 | 86684 | - | 384 |
| 15 | 6934 | 63221 | 1114 | 14218 | 2102 | 86700 | - | 368 |
| 16 | 7426 | 69771 | 1265 | 16323 | 2589 | 86783 | - | 461 |
| 17 | 6460 | 54037 | 956 | 12312 | 1832 | 86669 | - | 312 |
| 18 | 8440 | - | 1152 | 15794 | 2497 | 86671 | - | 353 |
| 19 | 3625 | - | 826 | 10368 | 1617 | 86668 | - | 296 |
| 20 | 5878 | 55032 | 827 | 11815 | 1594 | 86600 | - | 243 |
| 21 | 3561 | - | 560 | 7508 | 1308 | 86585 | - | 226 |
| 22 | 2835 | 31617 | 505 | 7059 | 1002 | 86568 | - | 195 |
Each row corresponds to a chromosome. The dataset consists of all reads aligned to the chromosome. We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare