Table 8.
QAN50 results of the tools on real simulated datasets of Chromosome 1
| Avg. | HapCHAT | HapCol | WhatsHap | WhatsHap | HapCUT2 | ReFHap | ProbHap | FastHare |
|---|---|---|---|---|---|---|---|---|
| Cov. | cov. 15x | cov. 20x | ||||||
| 25 | 87890 | 85002 | 87581 | 87581 | 51183 | 50325 | 49121 | 45846 |
| 30 | 93454 | 87599 | 92831 | 92565 | 57323 | 56745 | 54412 | 52138 |
| 35 | 96311 | 92483 | 96167 | 95611 | 61204 | 60612 | 59047 | 56881 |
| 40 | 97810 | 95818 | 97810 | 97270 | 64979 | 64535 | - | 60748 |
| 45 | 100826 | 98674 | 100826 | 100826 | 68274 | 66973 | - | 64003 |
| 50 | 103348 | 100826 | 103348 | 103348 | 73159 | 73256 | - | 69457 |
| 55 | 105243 | 103348 | 106341 | 106341 | 74273 | 74402 | - | 71058 |
| 60 | 107121 | 105243 | 107569 | 107569 | 76497 | 76497 | - | 73256 |
For each dataset, its row identified by its average coverage (Avg. Cov.). We report the results obtained by running the tools with maximum coverage 30 × for HapCHAT, 25 × for HapCol, 15 × and 20 × for WhatsHap. No maximum coverage was set for HapCUT2, ReFHap, ProbHap, and FastHare. The best result (highest value) for each dataset is boldfaced