| Antibodies |
| Bacterial and Virus Strains |
| Biological Samples |
|
|
| Chemicals, Peptides, and Recombinant Proteins |
| Critical Commercial Assays |
| Deposited Data |
| Public MC3 MAF |
Ellrott et al. |
https://gdc.cancer.gov |
| Clinical Data |
Liu et al. |
https://gdc.cancer.gov |
| Target Drug Database - Phial |
Van Allen et al., 2014 |
https://github.com/vanallenlab/2017-tcga-mc3_phial |
| DEPO |
Sun et al. |
http://depo-dinglab.ddns.net |
| OncoKB |
Chakravarty et al., 2017 |
http://oncokb.org |
| Mutation Validation |
Ng et al. 2018 |
N/A |
| Experimental Models: Cell Lines |
| Experimental Models: Organisms/Strains |
| Oligonucleotides |
| Recombinant DNA |
| Software and Algorithms |
| 20/20+ |
Tokheim et al., 2016b |
https://github.com/KarchinLab/2020plus |
| MutSig2CV |
Lawrence et al., 2014 |
http://archive.broadinstitute.org/cancer/cga/mutsig_run |
| MuSiC2 |
Dees et al., 2012 |
https://github.com/ding-lab/MuSiC2 |
| OncodriveCLUST |
Tamborero et al., 2013a |
http://bg.upf.edu/group/projects/oncodrive-clust.php |
| OncodriveFML |
Mularoni et al., 2016 |
http://bg.upf.edu/oncodrivefml/home |
| ActiveDriver |
Reimand and Bader, 2013 |
http://individual.utoronto.ca/reimand/ActiveDriver/ |
| CompositeDriver |
Liu et al. |
https://github.com/khuranalab/CompositeDriver |
| HotMAPS |
Tokheim et al., 2016a |
https://github.com/KarchinLab/HotMAPS |
| CHASM |
Carter et al., 2009 |
http://www.cravat.us/CRAVAT/ |
| VEST |
Carter et al., 2013 |
http://www.cravat.us/CRAVAT/ |
| e-Driver |
Porta-Pardo and Godzik, 2014 |
https://github.com/eduardporta/e-Driver |
| CanDrA |
Mao et al., 2013 |
http://bioinformatics.mdanderson.org/main/CanDrA |
| HotSpot3D |
Niu et al., 2016 |
(https://github.com/ding-lab/hotspot3d) |
| 3DHotSpots.org |
Gao et al., 2017 |
http://3dhotspots.org |
| e-Driver3D |
Porta-Pardo et al., 2015 |
http://github.com/eduardporta/e-Driver |
| DriverNET |
Bashashati et al., 2012 |
http://compbio.bccrc.ca/software/drivernet/ |
| OncoIMPACT |
Bertrand et al., 2015 |
https://github.com/CSB5/OncoIMPACT |
| MutationAssessor |
Reva et al., 2011 |
http://mutationassessor.org/r3/ |
| SIFT |
Ng and Henikoff, 2002 |
http://sift.jcvi.org |
| PolyPhen2 |
Adzhubei et al., 2013 |
http://genetics.bwh.harvard.edu/pph2/ |
| fathmm |
Shihab et al., 2013 |
http://fathmm.biocompute.org.uk |
| transFIC |
Gonzalez-Perez et al., 2012 |
http://bg.upf.edu/transfic/home |
| CTAT-score |
This Paper |
https://gdc.cancer.gov |
| MSIsensor |
Niu et al., 2013 |
https://github.com/ding-lab/msisensor |
| Other |
