Table 2. Variation percentage and expansion tests based on cpDNA sequences of B. clarkeana.
| Groupsa | Size | Percentage of variation | GST(se) | NST(se) | Expansion parameter (τ)b | Expansion Time (t) |
SSD (P) |
HRag (P) |
Tajima’s D (P) | Fu’s FS (P) | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Among groups |
Among populations | Within populations |
ΦST | ||||||||||
| H-T | 89 | 19.57 | 75.94 | 4.49 | 0.955 | 0.952 (0.036) | 0.952 (0.036) | 0 (0–0.016) |
- | 0.334 (0) |
0.684 (0.940) |
1.254 (0.913) |
3.709 (0.923) |
| H-T-G | 101 | 89.98 | 9.59 | 0.43 | 0.996 | 0.968 (0.029) | 0.986 (0.015) | 0 (0–0.646) |
- | 0.406 (0) |
0.459 (0.930) |
0.242 (0.649) |
8.022 (0.984) |
| Z-W-S | 60 | 100 | 0 | 0 | 1 | 1(NC) | 1(NC) | 3 (0–3.682) |
- | 0.261 (0.010) |
0.701 (0.220) |
2.851 (0.998) |
21.511 (1.0) |
| WL (Z, N) | 31 | 100 | 0 | 0 | 1 | 1(NC) | 1(NC) | 0 (0–0) |
- | 0.481 (0) |
0.741 (1.0) |
3.405 (1.0) |
30.223 (1.0) |
| W-S-Q-D | 90 | 98.56 | 0.29 | 1.15 | 0.989 | 0.904 (0.095) | 0.986 (0.015) | 0 (0–0.281) |
- | 0.511 (0) |
0.663 (0.92) |
3.247 (0.999) |
20.055 (0.999) |
| Q-D | 49 | -1.26 | 19.4 | 81.86 | 0.181 | 0.182 (NC) | 0.182 (NC) | 3 (0.418–3.00) |
121 457 (16 923–121 457) |
0.02 (0.040) |
0.807 (0.840) |
-0.644 (0.238) |
1.226 (0.581) |
| Total | 222 | 95.89 | 3.49 | 0.62 | 0.994 | 0.964 (0.027) | 0.995 (0.004) | 39.324 (0–210.824) |
- | 0.061 (0.210) |
0.124 (0.010) |
0.029 (0.600) |
22.282 (0.998) |
Notes
a: See Table 1 for mountain codes.
b: 97.5% CI. NST, differentiation index of ordered haplotypes; GST, differentiation index of unordered haplotypes; SSD, the sum of squared deviations; HRag, Harpending’s raggedness index.
NC, not calculated.