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. 2018 Jun 27;8:219. doi: 10.3389/fcimb.2018.00219

Table 1.

Primers used for the complete genomic characterization of DENV-2.

Primer name Sequence 5-3 Position Length
DV2-1-F AGTTGTTAGTCTACGTGGACCG 1–22 656
DV2-1-R GTGGACGTAGAGTTGCACCA 637–656
DV2-2-F ACCCTCATGGCCATAGACCT 541–560 557
DV2-2-R GGCAGGTTGTTTGGCTTCTG 1079–1098
DV2-3-F GGGGTTTCAGGAGGAAGCTG 976–995 767
DV2-3-R TTCTGTAGCCCCTGTGAGTG 1724–1743
DV2-4-F CCCACGCCAAGAAACAGGAT 1664–1683 538
DV2-4-R AAATCCCAGGCTGTGTCACC 2182–2202
DV2-5-F AACCGGGACAACTGAAGCTC 2084–2103 457
DV2-5-R TGAAGGGGATTCTGGTTGGA 2522–2541
DV2-6-F GGTGCAGGCTGATAGTGGTT 2412–2431 595
DV2-6-R CATGGACGGCTCTGTTGTCT 2988–3007
DV2-7-F GCCCTGAAACAGCAGAATGC 2831–2850 735
DV2-7-R TTCGTTCCTACTCGGGTCCT 3547–3566
DV2-8-F TCAACTCCTTGGTCACAGCC 3458–3477 528
DV2-8-R GTGCAACTCACCTTCCATGC 3967–3986
DV2-9-F CTTTCCCAAAGCACCTTGCC 3808–3827 683
DV2-9-R TGCTGCTGCCGTAATTGGTA 4472–4491
DV2-10-F AGGAAGCAGCCCAATTCTGT 4335–4354 565
DV2-10-R ATACAGCGCCTATGGTTCCG 4881–4900
DV2-11-F ATCCCAGAGCTGTCCAAACG 4835–4854 743
DV2-11-R CCGTGACCCATTCATGTCCT 5559–5578
DV2-12-F GGTGAAGCAGCCGGGATTTT 5440–5459 590
DV2-12-R TCCTTCGGGTGTGTTGATGT 6011–6030
DV2-13-F CAGCGCAAAGAAGAGGGAGA 5882–5901 681
DV2-13-R GCTGCCAGGAGTGTCAGTAG 6544–6563
DV2-14-F CTGCATACGGCTGAGGTAGG 6466–6485 693
DV2-14-R GAAGAGCTGCTGTGAGGGTT 7140–7159
DV2-15-F ACAGCCATTGCTAACCAAGC 7021–7042 729
DV2-15-R TTGCTGATCCTCGTGACACA 7750–7731
DV2-16-F TGCTGTGTCACGAGGATCAG 7728–7747 491
DV2-16-R TCATGCGTGGAGTTTCGTGA 8200–8219
DV2-17-F CCCACGATAGAAGCAGGACG 8209–8048 346
DV2-17-R GTCAGCAGTCTGACCACTCC 8536–8555
DV2-18-F CCACCCATACAAAACGTGGG 8460–8479 623
DV2-18-R CTCAGGGAGTTCCCTCTGGA 9064–9083
DV2-19-F GGAGCTGGTTGACAGGGAAA 8865–8884 631
DV2-19-R CAGCGATTTCTTCTGTGGCG 9477–9496
DV2-20-F AAGACCAAAGAGGCAGTGGG 9356–9375 578
DV2-20-R GAACCCAATGTGACGGGACT 9915–9934
DV2-21-F ATGTACTTCCACAGACGCGA 9862–9881 510
DV2-21-R TTTAACGTCCTTGGACGGGG 10353–10372
DV2-22-F TGCGGCTCATTGATTGGGTT 10108–10127 615
DV2-22-R AGAACCTGTTGATTCAACAGCA 10701–10723