Table 2.

Amino acid substitutions in the translated regions.

		C	prM	E	NS1	NS2A	NS2B	NS3	NS4A	NS4B	NS5	Total
YNXJ10 vs. M29095	Base substitution	20	49	102	69	54	29	142	61	18	168	712
	Base substitution rate	5.90	9.84	6.87	6.53	8.26	7.44	7.66	7.11	5.36	6.21	6.70
	AA substitutions	2	14	25	7	9	5	16	7	0	24	109
	AA substitution rate	1.77	8.43	5.05	1.99	4.13	3.85	2.59	2.45	0	2.66	3.21
YNXJ12 vs. M29095	Base substitution	20	33	95	71	54	32	179	99	18	208	809
	Base substitution rate	5.90	6.63	6.40	6.72	8.26	8.21	9.65	11.54	5.36	7.69	7.95
	AA substitutions	2	6	18	7	9	7	44	39	0	39	171
	AA substitution rate	1.77	3.61	3.63	1.99	4.13	5.38	7.12	13.64	0	4.32	5.04
YNXJ13 vs. M29095	Base substitution	21	94	90	76	52	22	138	69	18	192	772
	Base substitution rate	6.19	18.88	6.06	7.20	7.95	5.64	7.44	8.04	5.36	7.10	7.59
	AA substitutions	2	38	18	10	9	1	15	8	0	29	130
	AA substitution rate	1.77	22.90	3.63	2.84	4.13	0.77	2.43	2.80	0	3.22	3.83
YNXJ16 vs. M29095	Base substitution	51	62	128	75	54	22	175	68	18	188	841
	Base substitution rate	15.04	12.45	8.62	7.10	8.26	5.64	9.44	7.93	5.36	6.95	8.26
	AA substitutions	24	23	42	9	9	1	36	8	0	28	180
	AA substitution rate	21.2	13.86	8.48	2.56	4.13	0.77	5.83	2.80	0	3.10	5.31