Table 4.
Pairwise Genetic Differences Between Isolates in Multipatient Lineagesa
| Patient ID by ST | Age, y | Sex | Sample ID | Specimen | Sample Date (dd/mm/yyyy) | SNVs, No. | |
|---|---|---|---|---|---|---|---|
| Chromosome | FIBK/FIIK Plasmid | ||||||
| ST29 | |||||||
| KC0191 | 91 | M | INF249 | UTI | 01/12/2013 | … | … |
| CH0258 | 91 | F | INF322 | UTI | 17/02/2014 | 4 | 39b |
| ST323 | |||||||
| CH0142 | 72 | M | KSB1_4E | Rectal | 10/09/2013 | … | … |
| CH0150 | 85 | M | KSB1_7E | Rectal | 17/09/2013 | 4 | NA |
| CH0260 | 72 | F | KSB1_10J | Rectal | 11/02/2014 | 19 | 0 |
| CH0274 | 73 | F | KSB2_1B | Rectal | 25/02/2014 | 40 | 5 |
| ST37 (KL14) | |||||||
| CH0110 | 92 | F | INF042 | UTI | 08/05/2013 | … | … |
| CH0110 | 92 | F | INF059 | UTI | 16/05/2013 | 4 | NA |
| CH0252 | 85 | M | KSB1_7J | Rectal | 04/02/2014 | 1786 | NA |
Abbreviations: F, female; ID, identifier, M, male; NA, not available (no FIBK/FIIK sequence detected); SNVs, single-nucleotide variants; ST, sequence type; UTI, urinary tract infection.
aEach isolate within a lineage is listed with accompanying patient and sample data, as well as the number of chromosomal and plasmid SNVs detected between the isolate and the first collected isolate from the same lineage.
bIn INF249, the FIBK/FIIK plasmid sequence is integrated into the chromosome.