Table 1. Data volumes of publicly available circadian omic databases.
Source | Experiments | Tissues | Species | Total data pts. (est.) |
---|---|---|---|---|
CircadiOmics | 227 | 23 | 8 | ≈74 600 000 |
CircaDB | 30 | 15 | 2 | <1 800 000 |
DIURNAL | 11 | 3 | 3 | ≈3 009 600 |
BIOCLOCK | 2 | 2 | 2 | ≈3 600 000 |
CirGRDB | 50 | <20 | 2 | ≈9 000 000 |
Comparison of CircadiOmics with other circadian repositories. Experiments refers to the total number of experimental level datasets from each source. An experimental level dataset should contain at least two time points, more than one replicate at each time point, and time series data for a substantial number of molecular species–at least 1000 for transcriptome and acetylome, and at least 100 for metabolome and proteome–and each replicate. Total data points provide an estimate of the total number of individual measurements taken across different time points, replicates and molecular species. Numbers are collected from internal statistics for CircadiOmics and from publications, or official websites, for the other sources. Details are provided in Supplementary Material.