Table 1. Processed resources for transcription-factor/target interactions.
| Database | Type | Interaction [M/H] | TFs [M/H] | Tragets [M/H] | PMID |
|---|---|---|---|---|---|
| ARCHS4 | Co-expression | 518466/472585 | 1734/1724 | 21857/21918 | 29636450 |
| ChEA_2016 | ChIP-seq | 535545/461570 | 194/178 | 34462/35204 | 20709693 |
| CREEDS | LOF-microarray | 6140050/3583008 | 265/174 | 23170/20592 | 27667448 |
| ENCODE_2015 | ChIP-seq | 259695/1218728 | 44/175 | 18170/22008 | 22955616 |
| Enrichr Queries | Co-occurrence | 516300 | 1721 | 12487 | 23586463 |
| huMAP | Mass-spec | 14017 | 419 | 2109 | 28596423 |
| iREF | Mixed | 7239/57042 | 402.0/1372 | 3454/11021 | 18823568 |
| JASPAR-TRANSFAC | PWM | 139520/424314 | 104/222 | 20895/22258 | 14681366 |
| TF-Genes2Fans | Predictions | 22525/22525 | 278 | 6001 | 22748121 |
| LOF-GEO | LOF-microarray | 86951/85829 | 82/43 | 23876/23585 | 27141961 |
LOF: Loss of function; PWM: Position weight matrices; M/H: Mouse/human.