Table 1. The description of the models and the corresponding parameters implemented in CalFitter.
Model | Description | Model parametersa | Data sets |
---|---|---|---|
1 step | |||
N −> D | A fully irreversible transition | T f, Ea, ΔH‡, ΔCp | All |
N = D | A fully reversible transition with equilibrium | T m, ΔH, ΔCp | Calorimetry & spectroscopy |
N = D (Van’t Hoff's) | A fully reversible transition with equilibrium and van’t Hoff's enthalpy | T m, ΔH, ΔHvh, ΔCp | Calorimetry & spectroscopy |
N < = > D | A general transition with forward and reverse components | T fwd, Efwd, Trev, Erev, ΔCp | All |
2 steps | |||
N −> I −> D | A fully irreversible transition | Step 1: Tf, Ea, ΔH‡, ΔCp | |
Step 2: Tf, Ea, ΔH‡, ΔCp | All | ||
N = I −> D | A transition with a reversible step in equilibrium and an irreversible step | Step 1: Tm, ΔH, ΔCp Step 2: Tf, Ea, ΔH‡, ΔCp |
Calorimetry & spectroscopy |
N < = > I −> D | A general Lumry-Eyring model | Step 1: Tfwd, Efwd, Trev, Erev, ΔCp Step 2: Tf, Ea, ΔH‡, ΔCp |
All |
N = I = D | A fully reversible transition | Step 1: Tm, ΔH, ΔCp Step 2: Tm, ΔH, ΔCp |
Calorimetry & spectroscopy |
3 steps | |||
N −> I1 −> I2 −> D | A fully irreversible transition | Step 1: Tf, Ea, ΔH‡, ΔCp | All |
Step 2: Tf, Ea, ΔH‡, ΔCp | |||
Step 3: Tf, Ea, ΔH‡, ΔCp | |||
N = I1 −> I2 −> D | A transition with the reversible first step in equilibrium | Step 1: Tm, ΔH, ΔCp | Calorimetry & spectroscopy |
and the irreversible second and third steps | Step 2: Tf, Ea, ΔH‡, ΔCp | ||
Step 3: Tf, Ea, ΔH‡, ΔCp | |||
N < = > I1 −> I2 −> D | A general Lumry-Eyring model with two intermediates | Step 1: Tfwd, Efwd, Trev, Erev, ΔCp | All |
Step 2: Tf, Ea, ΔH‡, ΔCp | |||
Step 3: Tf, Ea, ΔH‡, ΔCp | |||
N = I1 = I2 −> D | A transition with two reversible steps in equilibrium | Step 1: Tm, ΔH, ΔCp | Calorimetry & spectroscopy |
and an irreversible step | Step 2: Tm, ΔH, ΔCp | ||
Step 3: Tf, Ea, ΔH‡, ΔCp | |||
4 steps | |||
N −> I1 −> D | A two-branch irreversible unfolding pathway | Step 1: Tf, Ea, ΔH‡, ΔCp | All |
N −> I2 −> D | Step 2: Tf, Ea, ΔH‡, ΔCp | ||
Step 3: Tf, Ea, ΔH‡, ΔCp | |||
Step 4: Tf, Ea, ΔH‡, ΔCp |
a T m – the melting temperature, Tf – the reference temperature of an irreversible step at which the corresponding rate is 1 (fwd. – forward rates; rev. – reverse rates), ΔH – the enthalpy change (at Tm if ΔCp is nonzero; vh – van’t Hoff's); ΔH‡– the activation enthalpy change (at Tf or Tm for irreversible and general steps, respectively, if ΔCp is nonzero); Ea – the activation energy; ΔCp – the heat capacity change. Since T-jumps are based on the relaxation kinetics, they cannot be simulated by the models with reversible steps assumed in equilibrium.