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. 2018 May 12;33(2):172–185. doi: 10.1264/jsme2.ME18054

Table 2.

Sequence information and diversity estimates using our newly designed Endozoicomonas-specific primers in V1–V2 and V3–V4 regions of the 16S rRNA gene.

Sample Na OTUb Gini-Simpson Shannon Evennessc
Primer V1V2 V3V4 V1V2 V3V4 V1V2 V3V4 V1V2 V3V4 V1V2 V3V4
Mil1S1 5094 2132 21 11 0.11 0.03 0.26 0.10 0.08 0.04
Mil2S1 5626 2664 36 19 0.04 0.03 0.15 0.12 0.04 0.04
Hel1S1 8829 4336 56 27 0.10 0.04 0.31 0.14 0.08 0.04
Hel2S1 701 405 30 29 0.72 0.75 1.95 2.05 0.57 0.61
Pal1S1 4129 4917 81 47 0.85 0.72 2.43 1.56 0.55 0.41
Pal2S1 7428 4723 69 43 0.41 0.26 1.15 0.76 0.27 0.20
Sty1S1 4197 2220 32 17 0.13 0.12 0.37 0.35 0.11 0.12
Sty2S1 189 78 9 9 0.40 0.62 0.83 1.38 0.38 0.63
Fav1A2 2205 2507 63 39 0.68 0.82 1.90 2.21 0.46 0.60
Fav2A2 4298 2220 82 51 0.85 0.83 2.35 2.31 0.53 0.59
Iso1M1 5543 2663 43 22 0.23 0.03 0.59 0.11 0.16 0.04
Iso2M1 7881 4618 49 21 0.51 0.03 1.04 0.13 0.27 0.04
Acr1S1 8286 5155 33 14 0.07 0.02 0.22 0.08 0.06 0.03
Acr2S1 8092 4336 74 38 0.82 0.50 2.07 0.95 0.48 0.26
Mon1S1 4779 3055 54 35 0.42 0.55 1.16 1.27 0.29 0.36
Mon2S1 5276 3874 76 33 0.20 0.55 0.70 1.14 0.16 0.33
Eup1S1 7706 4426 64 39 0.69 0.78 1.57 1.82 0.38 0.50
Eup2A2 6630 3454 45 25 0.78 0.52 1.86 1.08 0.49 0.34
Acr3S2 2840 1415 38 25 0.65 0.66 1.73 1.43 0.48 0.44
Acr4S2 824 207 20 10 0.64 0.69 1.36 1.46 0.45 0.64
Eup3S2 1896 325 62 25 0.47 0.64 1.36 1.76 0.33 0.55
Eup4S2 1964 725 15 9 0.24 0.49 0.62 0.77 0.23 0.35
Acr5S1 2435 565 54 14 0.88 0.57 2.61 1.30 0.65 0.49
Acr6S1 3091 654 46 16 0.84 0.40 2.14 0.96 0.56 0.35
Acr5D1 2890 725 59 16 0.84 0.20 2.31 0.56 0.57 0.20
Acr6D1 2749 570 44 13 0.83 0.53 2.13 1.06 0.56 0.41
Acr5A2 2473 1585 43 16 0.39 0.38 0.83 0.88 0.22 0.32
Acr6A2 2609 455 45 11 0.84 0.41 2.11 0.90 0.56 0.37
Acr5S2 2705 419 40 8 0.46 0.51 1.13 1.10 0.31 0.53
Acr6S2 3090 527 38 12 0.52 0.48 1.21 1.05 0.33 0.42
Sea1S1 1288 860 98 71 0.94 0.94 3.27 3.24 0.71 0.76
Sea2S2 666 451 60 61 0.94 0.93 3.20 3.31 0.78 0.81
Sea3S1 2909 1916 88 73 0.81 0.88 2.34 2.77 0.52 0.65

The highest values in each column are in bold.

a

N defined as the number of sequences.

b

Operational taxonomic units (OTUs) formed at an evolutionary distance of <0.03 (or approximately97% similarity).

c

Shannon index divided by the logarithm of the number of OTUs