Table 1.
Putative AtSR1 target genes related to plant immune response.
| Ratio | Direction | AGI Code | Functional Description | ChIP/SR1 | EMSA/SR1 |
|---|---|---|---|---|---|
| 1.90 | ↑ | At5g04720 | Encodes a member of the ADR1 family NB-LRR immune receptors | + | + |
| 2.36 | ↑ | At5g45000 | Disease resistance protein (TIR-NBS-LRR class) family | − | − |
| 0.99 | ↑ | At5g66890 | Disease resistance protein (CC-NBS-LRR class) family | + | + |
| 2.24 | ↑ | At5g41750 | Disease resistance protein (TIR-NBS-LRR class) family | + | −,+,+ |
| 1.77 | ↑ | At3g05650 | receptor like protein 32 (RLP32); FUNCTIONS IN: kinase activity | + | + |
| 1.77 | ↑ | At1g33560 | ACTIVATED DISEASE RESISTANCE 1, ADR1. | + | + |
| 1.16 | ↑ | At1g56510 | TIR-NB-LRR protein confers resistance to Albugo candidate | + | − |
| 3.23 | ↑ | At1g02450 | NIMIN1 modulates PR gene expression with other TF(s) | − | −,+,−,− |
| 2.25 | ↑ | At1g19610 | LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 | + | + |
| 1.00 | ↑ | AT1G64280 | NPR1 (NONEXPRESSER OF PR GENES 1); Co-transcription factor | + | + |
“Ratio” = fold expression in sr1 as compared to WT; “Direction” = “↑” (increase) or “↓” (decrease) in expression; “ChIP/SR1” = chromatin immunoprecipitation (ChIP) assay of promoter of each gene interacting with full-length AtSR1 protein in planta; “EMSA/SR1” = electrophoretic mobility shift assay (EMSA) assay of each cg-box containing fragment interacting with cg1 domain of SR1. As a reference, the ratio of expression level (log2) of PDF1.4 (At1g19610) in atsr1 vs. WT is 2.25, direction is up-regulation.