Table 2.
Gene mining within the SNP markers for all the linkage groups based on their physical position in mega base pairs (Mb).
| Chr. | Number of Markers | Cover Length (Mb) | Chr. Length (Mb) | Coverage (%) | Density (marker/Mb) | Genes in Reference Genome/chr | Mined Genes/Chro. | % of Mined Genes/Chro. | Number of Domains |
|---|---|---|---|---|---|---|---|---|---|
| LG1_chrA01 | 2306 | 99.85026 | 99.8847 | 100 | 23.1 | 2162 | 1946 | 90 | 800 |
| LG2_chrA02 | 2368 | 83.27669 | 83.447906 | 99.8 | 28.4 | 1824 | 1692 | 92.8 | 673 |
| LG3_chrA03 | 221 | 100.2122 | 100.26305 | 99.9 | 2.21 | 2187 | 1860 | 85 | 771 |
| LG4_chrA04 | 2057 | 62.76193 | 62.913772 | 99.8 | 32.8 | 1491 | 1210 | 81.2 | 102 |
| LG5_chrA05 | 778 | 91.9822 | 92.047023 | 99.9 | 8.46 | 4026 | 2900 | 72 | 997 |
| LG6_chrA06 | 193 | 102.9532 | 103.17044 | 99.8 | 1.87 | 2119 | 1788 | 84.4 | 757 |
| LG7_chrA07 | 1572 | 78.15538 | 78.251018 | 99.9 | 20.1 | 2369 | 2078 | 87.7 | 831 |
| LG8_chrA08 | 1664 | 103.6089 | 103.62634 | 100 | 16.1 | 2571 | 2233 | 86.9 | 869 |
| LG9_chrA09 | 1054 | 74.86152 | 74.999931 | 99.8 | 14.1 | 2532 | 2168 | 85.6 | 873 |
| LG10_chrA10 | 1139 | 100.6926 | 100.8666 | 99.8 | 11.3 | 2357 | 2176 | 92.3 | 897 |
| LG11_chrA11 | 1650 | 93.30573 | 93.316192 | 100 | 17.7 | 3305 | 2947 | 89.2 | 993 |
| LG12_chrA12 | 353 | 87.39659 | 87.484866 | 99.9 | 4.04 | 2733 | 2498 | 91.4 | 938 |
| LG13_chrA13 | 1285 | 78.02031 | 79.961121 | 97.6 | 16.5 | 2356 | 1829 | 77.6 | 777 |
| At-sub Total | 16,640 | 1157.077 | 1160.23 | 99.7 | 14.4 | 32,032 | 17,106 | 85.9 | 3007 |
| LG14_chrD01 | 198 | 60.91516 | 61.456009 | 99.1 | 3.25 | 2383 | 2063 | 86.6 | 800 |
| LG15_chrD02 | 237 | 67.22226 | 67.284553 | 99.9 | 3.53 | 2448 | 2356 | 96.2 | 845 |
| LG16_chrD03 | 161 | 46.6713 | 46.690656 | 100 | 3.45 | 1860 | 1632 | 87.7 | 681 |
| LG17_chrD04 | 365 | 51.27027 | 51.45413 | 99.6 | 7.12 | 2040 | 1765 | 86.5 | 121 |
| LG18_chrD05 | 109 | 60.2436 | 61.933047 | 97.3 | 1.81 | 3942 | 3610 | 91.6 | 1128 |
| LG19_chrD06 | 2419 | 64.09113 | 64.294643 | 99.7 | 37.7 | 2394 | 2231 | 93.2 | 844 |
| LG20_chrD07 | 393 | 55.29315 | 55.312611 | 100 | 7.11 | 2503 | 2191 | 87.5 | 854 |
| LG21_chrD08 | 1918 | 65.83381 | 65.894135 | 99.9 | 29.1 | 2765 | 2621 | 94.8 | 951 |
| LG22_chrD09 | 852 | 50.90761 | 50.995436 | 99.8 | 16.7 | 2493 | 2401 | 96.3 | 921 |
| LG23_chrD10 | 1854 | 62.78548 | 63.374666 | 99.1 | 29.5 | 2646 | 2378 | 89.9 | 888 |
| LG24_chrD11 | 691 | 65.54361 | 66.087774 | 99.2 | 10.5 | 3539 | 3250 | 91.8 | 1038 |
| LG25_chrD12 | 1593 | 58.94278 | 59.109837 | 99.7 | 27 | 2838 | 2581 | 90.9 | 931 |
| LG26_chrD13 | 1230 | 59.8794 | 60.534298 | 98.9 | 20.5 | 2551 | 2367 | 92.8 | 922 |
| Dt-sub total | 12,020 | 769.6 | 774.4 | 99.4 | 15.6 | 34,402 | 15,786 | 91.2 | 3134 |
| At/Dt Totals | 28,660 | 1926.7 | 1934.7 | 99.6 | 14.9 | 66,434 | 32,892 | 88.5 | 6141 |
Chr: chromosome; Mb: mega base pair; Dt: Dt_sub genome; At: At_sub genome.