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. 2018 Jul 5;13(3):179–189. doi: 10.3727/000000006783991791

SUPPLEMENTARY TABLE 2.

VALIDATION OF MICROARRAY DATA BY Q-PCR

Gene Symbol Microarray Q-PCR −ΔΔCt
Difference (TPA − Control) Log2 Ratio (TPA/Control) 1 h 3 h
Group I (difference >200)
FOS 595.75 3.00 3.03* 4.36*
TNF 1399.75 2.80 1.79* 4.32*
IL8 1536.05 2.70 3.22* 6.61*
JUN 343.35 1.30 1.10* 3.04*
NFKBIA 1320.85 1.20 0.79* 1.13*
HSPCA (Hsp90A) 939.80 0.50 −0.05 −0.03
Group II (difference 50–200)
DDX3X 56.80 0.80 0.05* 1.22*
SKIL (SnoN) 55.35 0.70 0.03 1.73*
CCL2 61.00 0.60 0.35* 1.23*
SLC7A1 60.65 0.60 −0.16* 0.85*
NFIL3 59.65 0.60 0.64* 2.56*
BCLAF1 (BTF) 55.90 0.50 −0.12* 0.80*
Group III (difference 30–50)
PDE4B 31.70 0.90 0.08 0.74*
C14orf92 44.70 0.70 −0.29 0.13
LIMD1 33.45 0.70 −0.33* −0.91*
TAF1 33.15 0.70 −0.43* 1.09*
KIAA0286 38.95 0.50 −0.16* 0.43*
JMJD3 34.75 0.50 0.32 2.00*

Eighteen genes showing upregulation in primary microarray analysis of CHX + TPA-treated and CHX + vehicle control were selected for quantitative real-time PCR analysis to validate the primary selection criteria. The Q-PCR is displayed as the differential cycle threshold (indicated as −ΔΔCt) for each gene for triplicate independent experiments.

*

Significant change in expression (p < 0.05).