SUPPLEMENTARY TABLE 2.
VALIDATION OF MICROARRAY DATA BY Q-PCR
Gene Symbol | Microarray | Q-PCR −ΔΔCt | ||
---|---|---|---|---|
Difference (TPA − Control) | Log2 Ratio (TPA/Control) | 1 h | 3 h | |
Group I (difference >200) | ||||
FOS | 595.75 | 3.00 | 3.03* | 4.36* |
TNF | 1399.75 | 2.80 | 1.79* | 4.32* |
IL8 | 1536.05 | 2.70 | 3.22* | 6.61* |
JUN | 343.35 | 1.30 | 1.10* | 3.04* |
NFKBIA | 1320.85 | 1.20 | 0.79* | 1.13* |
HSPCA (Hsp90A) | 939.80 | 0.50 | −0.05 | −0.03 |
Group II (difference 50–200) | ||||
DDX3X | 56.80 | 0.80 | 0.05* | 1.22* |
SKIL (SnoN) | 55.35 | 0.70 | 0.03 | 1.73* |
CCL2 | 61.00 | 0.60 | 0.35* | 1.23* |
SLC7A1 | 60.65 | 0.60 | −0.16* | 0.85* |
NFIL3 | 59.65 | 0.60 | 0.64* | 2.56* |
BCLAF1 (BTF) | 55.90 | 0.50 | −0.12* | 0.80* |
Group III (difference 30–50) | ||||
PDE4B | 31.70 | 0.90 | 0.08 | 0.74* |
C14orf92 | 44.70 | 0.70 | −0.29 | 0.13 |
LIMD1 | 33.45 | 0.70 | −0.33* | −0.91* |
TAF1 | 33.15 | 0.70 | −0.43* | 1.09* |
KIAA0286 | 38.95 | 0.50 | −0.16* | 0.43* |
JMJD3 | 34.75 | 0.50 | 0.32 | 2.00* |
Eighteen genes showing upregulation in primary microarray analysis of CHX + TPA-treated and CHX + vehicle control were selected for quantitative real-time PCR analysis to validate the primary selection criteria. The Q-PCR is displayed as the differential cycle threshold (indicated as −ΔΔCt) for each gene for triplicate independent experiments.
Significant change in expression (p < 0.05).