Table 1.
Minimum–maximum and average coverage (in number of reads) of the protein-coding and rRNA genes for the four assembled mitochondrial genomes
Gyrodactylus nyanzae | Macrogyrodactylus karibae | Cichlidogyrus halli | Cichlidogyrus mbirizei | |||||
---|---|---|---|---|---|---|---|---|
Gene | Range | Average | Range | Average | Range | Average | Range | Average |
cox3 | 151–184 | 165 | 21–48 | 39 | 41–59 | 51 | 101–131 | 118 |
cytb | 136–174 | 155 | 16–44 | 29 | 51–74 | 61 | 115–165 | 139 |
nad4L | 159–198 | 179 | – | – | 66–79 | 72 | 155–199 | 179 |
nad4 | 125–217 | 177 | – | – | 42–75 | 56 | 112–187 | 140 |
atp6 | 119–194 | 166 | 34–43 | 39 | 54–72 | 63 | 98–140 | 119 |
nad2 | 130–195 | 167 | 36–56 | 47 | 49–68 | 56 | 121–177 | 149 |
nad1 | 148–205 | 183 | 15–61 | 30 | 49–74 | 61 | 134–170 | 147 |
nad3 | 151–175 | 163 | 27–44 | 35 | 48–72 | 59 | 152–180 | 166 |
cox1 | 125–182 | 149 | 29–56 | 42 | 33–70 | 51 | 112–177 | 148 |
16S rRNA | 102–140 | 122 | 22–44 | 34 | 39–87 | 61 | 157–315 | 263 |
12S rRNA | 103–134 | 115 | 28–40 | 33 | 31–56 | 43 | 225–288 | 253 |
cox2 | 129–151 | 139 | 37–50 | 44 | 48–69 | 57 | 199–349 | 252 |
nad6 | 107–162 | 141 | 27–43 | 35 | 38–57 | 49 | 76–130 | 112 |
nad5 | 127–183 | 160 | 24–49 | 38 | 27–70 | 49 | – | – |
Averages are rounded to the nearest integer. “-”indicates a partially characterized or missing gene