Table 2.
Overview of the length of markers, the start and stop codons (protein-coding genes) and anticodons (tRNA genes) for the four assembled mitochondrial genomes
| Gyrodactylus nyanzae | Macrogyrodactylus karibae | Cichlidogyrus halli | Cichlidogyrus mbirizei | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Position | Length | Start/stop codon | Anticodon | Length | Start/stop codon | Anticodon | Position | Length | Start/stop codon | Anticodon | Length | Start/stop codon | Anticodon | |
| cox3 | 1-639 | 639 | ATG/TAA | 639 | ATG/TAA | 13-658 | 646 | ATG/T | 646 | ATG/T | ||||
| trnH | 642-709 | 68 | GTG | 63 | GTG | 659-722 | 64 | GTG | 63 | GTG | ||||
| cytb | 713-1789 | 1077 | ATG/TAA | 1080 | ATG/TAG | 723-1799 | 1077 | ATG/TAA | 1077 | ATG/TAG | ||||
| nad4L | 1792-2049 | 258 | ATG/TAA | 171 (partial) | ATG/- | 1803-2063 | 261 | GTG/TAG | 261 | GTG/TAG | ||||
| nad4 | 2022-3221 | 1200 | ATG/TAA | – | – | 2036-3250 | 1215 | ATG/TAG | 1212 | ATG/TAG | ||||
| trnQ | 3237-3299 | 63 | TTG | – | – | 3256-3317 | 62 | TTG | 62 | TTG | ||||
| trnM | 3298-3364 | 67 | CAT | – | – | 3374-3438 | 65 | CAT | 63 | CAT | ||||
| trnF | 3437-3504 | 68 | GAA | – | – | 3318-3381 | 64 | GAA | 64 | GAA | ||||
| AT-rich segment | 3505-4268 | 764 | – | – | – | – | ||||||||
| atp6 | 4269-4781 | 513 | ATG/TAA | 513 | ATG/TAG | 3443-3952 | 510 | ATG/TAG | 510 | ATG/TAG | ||||
| nad2 | 4788-5663 | 876 | ATG/TAA | 876 | ATG/TAA | 3960-4792 | 833 | ATG/TA | 833 | GTG/TA | ||||
| trnV | 5676-5741 | 66 | TAC | 63 | TAC | 4793-4855 | 63 | TAC | 64 | TAC | ||||
| trnA | 5754-5823 | 70 | TGC | 64 | TGC | 4866-4934 | 69 | TGC | 68 | TGC | ||||
| AT-rich region | – | – | – | – | – | – | – | 4958-5022 | 65 | |||||
| trnD | 5834-5899 | 66 | GTC | 65 | GTC | 5075-5136 | 62 | GTC | 64 | GTC | ||||
| nad1 | 5904-6791 | 888 | GTG/TAA | 888 | GTG/TAA | 5137-6024 | 888 | GTG/TAG | 888 | GTG/TAG | ||||
| trnN | 6796-6867 | 72 | GTT | 68 | GTT | 6027-6092 | 66 | GTT | 68 | GTT | ||||
| trnP | 6868-6939 | 72 | TGG | 64 | TGG | 6098-6162 | 65 | TGG | 64 | TGG | ||||
| trnI | 6938-7002 | 65 | GAT | 64 | GAT | 6162-6228 | 67 | GAT | 67 | GAT | ||||
| trnK | 7007-7073 | 67 | CTT | 62 | CTT | 6230-6292 | 63 | CTT | 64 | CTT | ||||
| nad3 | 7078-7428 | 351 | ATG/TAA | 351 | ATG/TAA | 6294-6641 | 348 | GTG/TAA | 348 | GTG/TAG | ||||
| trnS1 | 7441-7498 | 58 | GCT | 59 | GCT | 6648-6712 | 65 | GCT | 58 | GCT | ||||
| trnW | 7506-7570 | 65 | TCA | 65 | TCA | 6710-6769 | 60 | TCA | 63 | TCA | ||||
| cox1 | 7575-9122 | 1548 | ATG/TAA | 1548 | ATG/TAG | 6773-8356 | 1584 | ATG/TAG | 1581 | ATG/TAA | ||||
| trnT | 9132-9199 | 68 | TGT | 63 | TGT | 8369-8433 | 65 | TGT | 63 | TGT | ||||
| 16S rRNA | 9200-10,170 | 971 | 959 | 8434-9373 | 940 | 939 | ||||||||
| trnC | 10,172-10,237 | 66 | GCA | 60 | GCA | 9374-9436 | 63 | GCA | 61 | GCA | ||||
| 12S rRNA | 10,239-10,948 | 710 | 706 | 9437-10,166 | 730 | 722 | ||||||||
| AT-rich segment/repeat region | – | – | – | – | – | – | – | 10,167-10,743 | 577 | 320 | ||||
| cox2 | 10,963-11,538 | 576 | TTG/TAA | 579 | TTG/TAA | 10,744-11,316 | 573 | ATG/TAA | 576 | ATG/TAA | ||||
| trnE | 11,622-11,689 | 68 | TTC | 68 | TTC | 11,321-11,386 | 66 | TTC | 61 | TTC | ||||
| repeat region | 11,694-12,296 | 603 | – | – | – | – | – | 320 | ||||||
| nad6 | 12,391-12,867 | 477 | ATG/TAA | 477 | ATG/TAG | 11,390-11,881 | 492 | TTG/TAA | 447 | ATG/TAA | ||||
| trnY | 12,869-12,934 | 66 | GTA | 64 | GTA | 11,883-11,947 | 65 | GTA | 63 | GTA | ||||
| trnL1 | 12,951-13,021 | 71 | TAG | 66 | TAG | 11,951-12,018 | 68 | TAG | 63 | TAG | ||||
| trnS2 | 13,035-13,093 | 59 | TGA | 58 | TGA | 12,019-12,083 | 65 | TGA | – | – | ||||
| trnL2 | 13,097-13,163 | 67 | TAA | 68 | TAA | 12,084-12,148 | 65 | TAA | – | – | ||||
| trnR | 13,176-13,246 | 71 | TCG | 64 | TCG | 12,150-12,212 | 63 | TCG | – | – | ||||
| nad5 | 13,250-14,806 | 1557 | ATG/TAG | 1566 | ATG/TAG | 12,214-13,758 | 1545 | ATG/TAG | – | – | ||||
| repeat region | 174 | 13,911-14,302 | 392 | – | ||||||||||
| repeat region | 167 | 14,372-14,915 | 544 | – | ||||||||||
| trnG | 14,812-14,880 | 69 | TCC | 64 | TCC | 14,931-14,996 | 66 | TCC | 64 | TCC | ||||
Positions on the genome are only indicated for complete mitogenomes