Table 1. Comparison of cp DNA features among 11 Santalales species.
Features | Viscum minimum | Viscum crassulae |
Viscum album |
Dendrotrophe varians |
Osyris alba |
Champereia manillana | Taxillus sutchuenensis | Taxillus chinensis | Helixanthera parasitica | Macrosolen cochinchinensis | Schoepfia jasminodora | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Size (bp) | ||||||||||||
Total | 131,016 | 126,064 | 128,921 | 140,666 | 147,253 | 147,461 | 122,562 | 121,363 | 124,881 | 122,986 | 118,743 | |
Protein-coding genes | 66,691 | 66,562 | 64,231 | 64,624 | 66,500 | 66,254 | 63,593 | 63,722 | 64,010 | 64,100 | 58,362 | |
tRNA genes | 2,735 | 2,662 | 2,736 | 2,792 | 2,656 | 2,792 | 2,139 | 2,141 | 2,287 | 2,287 | 2,559 | |
rRNA genes | 9,034 | 9,044 | 9,050 | 9,068 | 9,044 | 9,049 | 9,072 | 9,072 | 9,062 | 9,052 | 9,050 | |
introns | 15,314 | 15,278 | 17,161 | 16,434 | 16,648 | 10,052 | 6,991 | 6,858 | 9,091 | 8,694 | 13,971 | |
IGSs | 37,242 | 32,518 | 35,743 | 47,748 | 52,405 | 59,314 | 40,767 | 39,570 | 40,431 | 38,853 | 34,801 | |
LSC | 75,814 | 73,226 | 73,893 | 81,684 | 84,601 | 83,505 | 70,630 | 70,357 | 73,043 | 69,018 | 84,168 | |
SSC | 9,014 | 8,628 | 8,632 | 10,870 | 13,972 | 7,806 | 6,102 | 6,082 | 6,334 | 6,144 | 9,763 | |
one IR | 23,094 | 22,105 | 23,198 | 24,056 | 24,340 | 28,075 | 22,915 | 22,462 | 22,752 | 23,912 | 12,406 | |
Number of genes | ||||||||||||
Total | 99 | 98 | 96 | 101 | 101 | 101 | 91 | 91 | 92 | 92 | 101 | |
Protein-coding genes | 66 | 66 | 64 | 67 | 67 | 67 | 64 | 64 | 63 | 63 | 69 | |
tRNA genes | 29 | 28 | 28 | 30 | 30 | 30 | 23 | 23 | 25 | 25 | 28 | |
rRNA genes | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | |
Genes with introns | 15 | 14 | 14 | 16 | 16 | 16 | 8 | 8 | 10 | 10 | 14 | |
% GC content | ||||||||||||
Total | 36.2 | 36.4 | 36.4 | 37.8 | 37.7 | 37.4 | 37.3 | 37.3 | 36.5 | 36.6 | 38.1 | |
LSC | 33.3 | 33.6 | 33.5 | 35.5 | 35.6 | 35.3 | 34.7 | 34.7 | 33.8 | 33.6 | 36.1 | |
SSC | 24.2 | 24.0 | 24.8 | 29.7 | 31.2 | 27.9 | 26.2 | 26.2 | 25.5 | 24.4 | 30.7 | |
IRs | 43.2 | 43.4 | 43.2 | 43.7 | 43.1 | 41.9 | 42.8 | 43.0 | 42.3 | 42.2 | 47.9 | |
% Coding regions | ||||||||||||
Total | 59.8 | 62.1 | 59.1 | 54.4 | 53.5 | 53.0 | 61.1 | 61.8 | 60.3 | 61.3 | 59.0 | |
Protein-coding genes | 50.9 | 52.8 | 49.8 | 45.9 | 45.2 | 44.9 | 51.9 | 52.5 | 51.3 | 52.1 | 49.2 | |
tRNA genes | 2.1 | 2.1 | 2.1 | 2.0 | 1.8 | 1.9 | 1.7 | 1.8 | 1.8 | 1.9 | 2.2 | |
rRNA genes | 6.9 | 7.2 | 7.0 | 6.4 | 6.1 | 6.1 | 7.4 | 7.5 | 7.3 | 7.4 | 7.6 |