Table 1.
Summary of hybrid genome assemblies of two marine fungi and statistical summary of reads from Roche 454 and Illumina.
| Calcarisporium sp. KF0525 | Pestalotiopsis sp. KF079 | ||
|---|---|---|---|
| Genome size | 36.8 Mb | 47.5 Mb | |
| Scaffolds | 2274 | 318 | |
| N25* (#scaffolds) | 162.8 kb (43) | 821.7 kb (11) | |
| N50* (#scaffolds) | 95.7 kb (115) | 429.3 kb (32) | |
| N75* (#scaffolds) | 51.3 kb (263) | 249.3 kb (67) | |
| GC content (%) | 50.6 | 52.1 | |
| No. of Genes | 15,459 | 22,626 | |
| Read Statistics | |||
| Roche 454 | No of reads | 773,371 | 824,828 |
| Total length | 441,946,919 | 424,413,772 | |
| Average read length | 571.5 | 514.5 | |
| Genomic coverage | 9.3× | 11.5× | |
| Illumina | No of reads | 77,557,838 | 79, 803, 010 |
| Total length | 7, 833,341,638 | 8, 060,104,010 | |
| Average read length | 101 | 101 | |
| Genomic coverage | 169× | 219× | |
*Length of the scaffold until which sum of lengths of scaffolds are reached to 25%, 50% and 75% of total assembled genome size are called N25, N50 and N75 respectively.
#Scaffolds – Number of scaffolds in the assembled genome that constitute particular N25 or N50 or N75.